Clarias gariepinus (North African catfish): 128515657
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Entry
128515657 CDS
T10780
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128515657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128515657
03036 Chromosome and associated proteins [BR:
cgar03036
]
128515657
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128515657
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128515657
mRNA degradation factors
5'-3' decay
Decapping complex
128515657
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128515657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
128515657
NCBI-ProteinID:
XP_053345731
LinkDB
All DBs
Position
28:17245101..17256436
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AA seq
482 aa
AA seq
DB search
MATAKMENVGAVTMGLSKPNGQLRGLSSQSGPTVQGNPFARVSTGVQKLTPDSQEGPGIR
FGEDWKKSLQLPPKDTRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQALVMVPTRELALQVSQISIQL
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDKVQIMVMDE
ADKLLSQDFVVLIEDIISFLDKNRQILLYSATFPTSVQKFMAKHLKKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRIGRSGR
FGHLGLAINLITAEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHTANDEAEEQETPG
DT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgcaaagatggagaacgtgggtgctgtcacgatggggctcagcaagccaaac
gggcagctccgggggctgagctcgcaatcgggacccaccgttcagggcaatccgtttgca
agagtttctaccggagtccaaaaactgactcccgactctcaggaaggacctggaatcagg
tttggcgaagactggaaaaagagcctgcagcttccacccaaagacactagaatgaaaacg
tctgatgtgaccgccacaaaggggaacgagtttgaagactattgcttaaagagggagtta
ctcatgggaatctttgaaatggggtgggagaaaccttccccagttcaggaagagagtatc
cctattgctctctccggtcgtgacatcctggctcgcgccaagaacggaacaggaaagagc
ggcgcgtatcttatccccatgctggagaggatagacttgaagaaagactatattcaggcc
ttagtaatggtgcccactcgtgagctcgcactacaggtcagccagattagcattcagctc
agtaaacatcttggcggagtcaaagtcatggccaccacgggcggaacgaacctacgagat
gacatcatgcgcctggatgaaatcgtgcatgttgtcatagcgacaccaggaaggatcctg
gacttgatcaagaagggtgtagcgaaagtggataaagttcagattatggtaatggatgag
gcggataagctactctcccaggactttgtggtgctcatcgaggacatcatcagcttcctg
gacaagaacagacagattttgctgtattccgccacctttcccaccagtgtgcaaaaattt
atggcgaagcatttaaagaagccgtacgagatcaatctgatggaagagctgactttgaag
ggcatcacgcagtactacgcctatgttactgagaggcagaaggtgcactgccttaacacg
ctcttctccaggctgcaaatcaatcagtccatcatcttttgcaactcgactcagagggtt
gaactgctggccaagaaaattacccaactgggatactcctgtttctacatacatgccaag
atgatgcaggagtaccgaaaccgggttttccacgactttagaaatggtttgtgcagaaat
ctggtctgcacagatttgtttacgagaggcatcgacatccaggcagtgaacgtggtcatc
aacttcgacttcccgaagagcgcggagacgtatctacatcgcatcgggcgctcagggagg
ttcggccacctgggtctggccattaacctgatcacggcggaggatcgcttcaacctgaaa
gccatcgaggaccagcttgtgactgatatcaagcctattcccagcagcatcgataaaagt
ctgtatgtggcagagttccacacagccaacgatgaggcagaggagcaggagacacctggg
gacacctaa
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