Clarias gariepinus (North African catfish): 128515716
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Entry
128515716 CDS
T10780
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128515716 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128515716 (arid1ab)
03021 Transcription machinery [BR:
cgar03021
]
128515716 (arid1ab)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128515716 (arid1ab)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
ARID
128515716 (arid1ab)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128515716 (arid1ab)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128515716 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
128515716
NCBI-ProteinID:
XP_053345828
LinkDB
All DBs
Position
28:complement(19195546..19241111)
Genome browser
AA seq
2213 aa
AA seq
DB search
MAAQVAALSTSPAAELKKADAHEDALPGETTQHESAETGGQKELQDGADAPGGGGGGGGG
RRGGGGDPELKNGNDNSSRNNNNNNNNLDAGVAPPHHHNQQQHPHPGAFPPPPYGGSQHY
TRGPFHQHGGQQSPGMAPGLPGGVMEQYPGNSHEHGFSNHYGPFPNRTQYQGQGYGMNSP
RANQPGKPGATLMAFNNQRYNMNNPQPTPTPTLNQLLTSPAAGGRSYQNYPQTDFNAQDG
TGKSAGELSGTNHYAGGHAPWQQRGHHASPGSTAHALNRNQTPTPMDQVGKIRGQHFGAG
NPYSQQQGPAPGAQQGPPYPGQGYGSPGTQRYPMGMQGRTPGAVGGLQYGQQMGYGQQGP
GAYGQGQGGYYGQQHPLTPHGGLPQGSYPQQHPSGPGSQHPYSQSPSGPPYSQQPQAQTS
YPQTPHSQAGQPSYPQPQTVLQSQSAQGPQQPQQQPGFPQASPGSGQPPAPPVPPSSQTQ
QQQQGSTQQQQQPSVGPPQQSQQPMGHSAPPQGHSPYSQTPPTQTPQQTTPFQRFPPPQQ
ELSQDSFSSHASGPTSNTPLASSKSGTEDSMQGRPSSLPDLGSIDDLPTGTEGALSPGVS
TSGVSSSQGEQSNPAQSPFSPHTSPHVPGIRGPSPSPVGSPASATTSRTGPLSPAGSQMP
PRPSSVQSDGILHSSMNQAAVGQDRVYMRNTQMPAYGSPQPASALSPRPSSGGQVHAGMG
HYPQNNSMGNYGPQGAQYVPQGYPRQPGYSGMPGPNYPGGPNMGSPINPMSGQAGGGAYS
GMPPGRMVPGPGQMGSRPYGPGMSPNMAGIPPQVASGMCPPPGMNRKPQDPSSAGMHHGP
ANSVHGPAGYPAMNQAMMGAGPPYAPPINSMHGMMNQAGPYPMGGSVANNSAGMVPSPEL
EKINQNQKMNNKADGTPKTESKKKSNSSTTTNEKITRLYELGPEPERKMWVDRYLAFAEE
KAMGMTNLPAVGRKPLDLFRLYASVKEIGGLMQVNKNKKWRELATNLNVGTSSSAASSLK
KQYIQCLYAFECKIERGEDPPPDIQDPKKNQPKVQPPSPAGSGSLQGPQTPQSTCSSMTE
GNDLKPPTPASTPHSQMPPMPGVRSSVNVQDPFADGGDPAFARRNSMTPNSNFQPGMGGP
PDMMGRLGPYEPNKDPFSGMRKAGEQFMQNPGPTSGMSEQYSRGPPGPMGNMQLGHRQQY
GPYGPGYDRRQDPGMSPDGSIAPGASQPNTMPSGADTGMYSPNPQQQRHDSYVNQYPSQN
APPSGQYPSQQPGLYPQQPNYIQKRPGDGGYGPPAKRHEGEMYPFSGQQQQAPQASSGPQ
SQPQQEMYNQYNAYPGTDRRPPGPQSQFPFGFGRDRGPNAGGSNSQSSMPPQMMGSPLPS
VPDGPQGPMWQGRNDMTYPNYPNRQGPPAVPTQGPGYHAMNRSEDMLPSDQRINHEGPWP
GHVNQRQPPYGPGSSGPPMSRPLQSNFQASQNHIPQVSSPAPMPRSMGNSTSPSKSPYMQ
TGIKIQKPGSVVPASNIAPPPVQPPMMRRDVAFPPGSVEATQPILKPRRRLTTKDIGTPE
AWRVMMSLKSGLLAESTWALDTISILLYDDNSISTFSLCQLPGFLELVVEYFRKCIIEIF
GILKEYEVGDPGQRTLIDPDAPDNDMSDDEIPDGWQMDEEEVKEDKICQHMPQIQIKHEK
DDHIHDQKSSEKSEEVKFLEISSSKAREITTFLQDSSAEQDKLKQASKFDKLPIKVVWKK
DPFVIGRTGKLGRRQTFDSGLIHWSVGGGDTTEHIQTRFESKMELLKPHKPVPVNTVDLV
TEKRNKNKRSKPELQNKQQLESQPSSGQALEKENSLDVASASATTMDTAEESVRNGREKK
EETNKDKFLFGIDPSQNSNIKILEDEPHSKDESPLCTLSDWQDALARRCICVSNIVRSLS
FIPGNDCEMSKHPGLLLLLGRVVLLHHRHPERKEAPVTYEKEDEEDEGVSCEQDEWWWDC
LEVLRENCLVTLANISGQLDLSMYPESICLPLLDGLLHWAVCPSAEAMDPFPTLGLNGSV
SPQRMVLETLSKLSIQDNNVDLILATPPFSRLEKFYSSLVRLIGDRKIPVCREMAVVLLA
NLAQGDSQAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQSSLLHMQGPHIEPTSVDMMQ
RAARALHALAKVEENRSEFMLYESRLLDVSVSPLLNSGVSHVICDVLFLIGQS
NT seq
6642 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgctgcgctgagcacgagccccgccgccgagctgaagaaggcggac
gcgcacgaggacgcgctaccgggagagacgacgcagcacgagagcgcagagaccggcgga
cagaaggagctccaggacggcgcggatgcaccgggaggaggaggaggaggaggcggaggg
aggcgcggaggaggtggagatcctgagctgaagaacggtaacgacaattcgtcccgtaac
aacaacaacaataacaacaacctggacgcgggcgtcgctcctcctcaccaccacaaccag
cagcagcacccgcacccgggcgcgttccctccaccgccatacggcggcagccagcactac
acccggggcccttttcatcaacatggcggacaacaaagccctggcatggcaccggggctc
ccgggcggcgtgatggagcagtacccgggtaactcacacgagcacggcttctccaaccac
tacgggcctttcccgaaccggactcagtaccagggccagggttacggcatgaactccccg
cgcgcgaaccagccgggcaaaccaggggcaactctcatggcgtttaataatcagaggtat
aacatgaacaacccgcaaccgaccccgaccccgaccctgaaccagctcctgacctccccc
gccgccgggggcaggagctaccagaactacccccagactgactttaacgctcaggacggg
acggggaaaagcgcgggggagctgagcggcactaatcactacgcagggggtcacgcgccg
tggcaacaaagaggccatcacgcgagcccgggcagcaccgctcacgcgctcaacaggaac
cagaccccaacgccaatggaccaggtggggaagatcaggggtcagcatttcggagcagga
aacccttactctcagcagcaggggcctgcacctggggcccagcaagggcctccttacccc
gggcaaggctacggttcccccggaacacagagatacccaatgggcatgcaaggacggacc
cctggtgctgtggggggtctgcagtacggacagcagatgggttatggacagcaaggccca
ggagcttatggtcagggccaaggaggttactacggtcaacagcaccctcttactccccac
ggaggacttccgcagggttcgtaccctcagcagcaccccagtggcccgggctcccagcat
ccctactcccaatccccatcaggtcctccgtactcccagcaaccgcaagcccagacttcg
tacccccaaactccacattcccaggctggccagccctcttacccccagcctcagactgtt
ctacagtcccagtcagctcagggccctcagcagcctcaacagcagcctggattcccccaa
gcgtcgcctggttccggacagcctcctgctcctcctgtgcctccttcttctcagactcag
cagcagcaacaaggctcaacacaacagcagcagcagcccagtgtagggcctcctcagcaa
tcccagcagcctatgggtcacagtgctcctccacaggggcactcaccttactcacaaact
ccaccaacacagactccacagcagacaacgcccttccagcgcttcccgcctccacaacag
gagttgtcccaagactcatttagttcgcacgcttccggtcctacctcgaacacacccctg
gcctccagtaagagcggtacagaggacagcatgcaaggccgcccttcaagcctgccggac
ctgggctctatcgatgacctgcccacgggtacggagggggcgctgagtccgggggtcagc
acatcaggggtctccagcagtcagggcgagcagagcaacccagcccagtcacctttctcc
ccacacacctctcctcacgtaccgggcatccgtgggccttcgccatcgcctgtaggctcg
cccgccagtgccaccacttctcgcactggacccctttcacccgctggaagtcagatgcct
cccagaccttccagcgtccagtcggatggaatcctgcattcttctatgaaccaggctgct
gtgggccaggatagagtctacatgcggaacacacagatgcctgcttacggctcgcctcag
cccgcgtctgccttatccccacgcccatcatctggaggccaagtgcatgctgggatgggt
cattatcctcaaaacaactccatgggcaattacgggccacagggagcacagtacgttccc
caaggctacccgagacagccaggctacagtggcatgcctggtcctaactaccctggtggt
ccaaacatgggcagcccgataaaccccatgtcagggcaggcaggaggtggcgcgtacagc
gggatgcctcccgggcgcatggtgccggggccaggacagatgggctcaaggccgtacggc
ccgggaatgagtcccaacatggcgggcataccgcctcaagtggcctcaggcatgtgccct
ccacctggcatgaacagaaaaccgcaggatccgtcctcagcgggcatgcaccacggtccg
gcaaactccgtacatgggcccgctggttatcccgctatgaaccaggccatgatgggagcc
gggcctccgtatgcaccacctataaacagcatgcacgggatgatgaaccaggcagggccg
taccccatggggggcagcgtggccaacaactcagcaggtatggtgcccagccccgagttg
gagaagatcaaccaaaaccagaagatgaataataaagccgatgggactccgaaaaccgaa
tcaaaaaagaagtccaattcgtccaccaccacaaatgagaaaatcactcgtctgtatgag
ctgggtcctgagcccgagaggaagatgtgggtggaccggtacctggcgttcgccgaggag
aaagccatgggcatgacgaacctgccggcggtgggacgcaagcctctcgacctcttccgt
ctctatgcgtctgttaaagagatcggcggccttatgcaggtaaacaagaacaaaaaatgg
agggagttggcgacaaacctaaatgttggaacctccagtagcgcagctagctccctaaag
aagcagtacattcagtgtctgtatgcctttgagtgtaaaatcgagcgtggtgaggaccca
ccgccagacattcaagaccccaaaaagaaccagccgaaggtacagccaccctctccagcc
gggtctggatctttacagggccctcagactccacagtcgacttgcagctccatgactgag
ggaaatgatttaaaaccccctacacctgcgtcaacaccccacagccagatgccccctatg
cccggtgtgcggagcagcgtgaacgttcaagacccatttgctgatggtggtgaccctgcc
tttgctagacggaactcaatgacaccgaactccaacttccagcccggaatggggggcccg
cctgatatgatggggcgcttgggtccgtacgagcctaataaggacccttttagtggtatg
aggaaagctggtgagcagttcatgcagaatccaggccccaccagtggaatgagtgagcaa
tatagccgaggccctccaggacctatgggtaacatgcagttaggtcacaggcaacagtat
ggaccatatggaccagggtatgaccggagacaagatccaggcatgagtccagatggtagt
atagctcctggagcttcacagccaaacaccatgccttctggtgcagacacggggatgtat
tcgcctaatccacagcagcaaaggcatgattcctatgttaatcagtaccctagccaaaat
gcacctcctagtggacaatacccaagtcagcagcctggactgtacccacagcagccgaat
tacatacaaaagaggcctggagatggtggttatggtcccccggcaaagcgccatgaaggg
gaaatgtatccattcagtggccagcagcaacaggcccctcaagcctcaagtggaccccaa
tcccaaccccaacaagaaatgtacaaccagtataatgcctacccaggcacagatcgacgt
ccacctggtccacaaagtcagttcccttttggttttggacgggacaggggacctaacgct
ggaggctctaactctcagtcctctatgccaccgcagatgatgggcagtcccttgccgtct
gtccctgatgggccccaaggtcccatgtggcaaggaagaaatgatatgacctatcctaac
tatcccaatcgtcagggtcctcctgcagttcccactcaaggtccagggtaccatgccatg
aatcgttctgaagacatgttaccttcagaccagcgaatcaatcatgaaggtccatggccg
ggtcatgtaaaccagagacagcctccttatggacctggtagttctggcccacccatgtct
agaccactacagtccaattttcaggcttctcaaaatcatattccacaggtatcaagtcca
gcacccatgccaagaagcatggggaacagtacgtctcccagcaagtccccttatatgcaa
actgggataaagattcagaaacctggatctgtagtcccagcgtcaaacatagccccacca
ccagtacagcctcccatgatgaggagagatgtagcctttcctccagggtccgtggaggcg
acccagcccatcctcaaaccacgtcgccgacttacgacaaaggatattggaacaccagaa
gcgtggagagtcatgatgtccctcaaatcaggattgctggcagagagcacttgggccttg
gacaccatcagtatacttctttatgatgataatagcatttccaccttcagtctttgtcag
cttcctggcttcctcgaactcgttgtggagtactttcgtaaatgcatcattgaaattttt
ggcatcttaaaagaatatgaggtcggagatccagggcagcgaacgctgattgacccagat
gctccagacaatgatatgtctgatgatgaaatcccagatggatggcagatggatgaggaa
gaggtcaaagaggacaaaatttgccaacacatgccacagatccaaatcaagcatgagaag
gatgatcatattcatgaccaaaaatccagtgaaaagtctgaagaagtgaagtttctggaa
atttcttcatctaaagcccgtgagataactactttcttacaggacagtagtgcggaacaa
gataagcttaaacaggcaagcaaatttgacaagcttcctattaaggtagtgtggaagaaa
gatccatttgtcattggtcggaccggcaaattgggccggcgacagacttttgacagtgga
ctgattcactggagtgttggtggaggcgacaccacggaacatatccaaactcgcttcgag
agcaagatggagctgcttaaacctcataaaccggtgcctgtaaatacagtggacctggtt
actgaaaagcgaaacaaaaataaaagaagcaaaccagaactgcaaaataagcaacagttg
gagtctcagccttcctcaggccaagcattggagaaagagaacagcttagatgttgccagt
gcatctgctaccactatggacactgcagaagaatctgtaaggaatggccgggagaaaaag
gaggagaccaacaaagataagttcctgtttggaattgacccatcacagaacagcaacatt
aaaatccttgaggatgagccacatagcaaggatgagtccccattgtgcacgttgtcagac
tggcaggatgcactagctcgccgctgcatatgtgtttccaacattgtccgcagtctctcc
ttcatccctggcaacgactgtgaaatgtccaaacacccaggcctgctgcttttactgggc
cgtgtggtgctcctgcaccaccggcatcccgagcgcaaagaggctcctgtcacttatgag
aaagaggacgaggaggatgaaggagtcagctgtgagcaagatgaatggtggtgggactgt
ctggaggttctgcgtgaaaactgtctggtcacgttagctaacatctcgggccagctggac
ctgtccatgtaccctgagagtatctgcctgccactgctggatggtcttcttcactgggct
gtctgcccctcagcagaagccatggatcccttccctacactgggccttaatggatcggtt
tcccctcagagaatggttcttgagacccttagcaagctcagcatccaagacaataatgtt
gacctcattctggcaacaccacccttcagtcgcctggagaaattctacagttcactggta
cgcttaattggtgaccgcaagatccctgtatgccgggagatggcagttgtgctgttagcc
aacctggcccagggtgacagccaggcagctcgggccatcgccgtgcagaaaggcagtata
gggaatctcctggggtttctggaggacagtctagcagccacacaattccaacaaagccag
tcttcactgttacatatgcagggaccccacattgaacccactagtgtggacatgatgcag
cgggctgcccgtgccctgcatgccctcgccaaagtagaggagaaccgctccgagtttatg
ttgtacgagtcacgactactggatgtctctgtatccccccttctgaactcaggagtgtcc
cacgtcatctgtgatgtactgtttctaattggccagtcatga
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integrated database retrieval system