Clarias gariepinus (North African catfish): 128515905
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Entry
128515905 CDS
T10780
Symbol
skic2
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128515905 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128515905 (skic2)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128515905 (skic2)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128515905 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
128515905 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
HTH_23
DUF2695
DUF3516
Motif
Other DBs
NCBI-GeneID:
128515905
NCBI-ProteinID:
XP_053346126
LinkDB
All DBs
Position
28:complement(9111190..9137175)
Genome browser
AA seq
1253 aa
AA seq
DB search
MEKIDLPAPGPDDLPLSLLEMGCSGKFEVLTHPQATNTPFPPQSTLPHGLPPFCVDLKME
VEKRFLQDPAWMPIHDTTDAFQKFLKLTKRDRQVDSLLHCSLSPLHSGLSVVRDPTTGML
LDFTEVLMEHTGLSAKNSLSMQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEL
EEDIDFENDLLTVPPGLKAGMNFSNKDAKTTKGDVNLLSLLSTFDDVIESVPEEKERGSG
GAEEAKLHRTNSLEDLGIKDTLPSPAPAPTPAGASSPSKKVGGTLNSRTEEKERKWAVHV
DISSPCEDFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIA
LSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQINPEGSCLIMTTEILRSML
YNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWI
GRIKKRPIYVISTVKRPVPLEHYLYTGNSTKTQKELFLLLDATGSFLTKGYYAAVEAKKE
RTSKHAQSFGTKKVSQSTTPNQDRAVWQTLLHFLSERQQTPVVAFTFSRTRCDDNARSLT
SLDLTSSVEKNEIHSFFHKSLSRLRGGDRQLPQILLMRDLLKRGVAVHHSGILPILKEVI
EMLFSKGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLHPGEYIQMAGRAGRR
GLDATGTVIILCKTGVHEMADLHTMMLGKPTLLQSQFRLTYTMILNLLRVEALRVTDMMR
RSFSESHRDTQANERRIAELKRELSSLPPLDTEGQLSDLLSYYHTLTELRITTEALQRAV
MESMNGMKALSVGRVIVVNNAQHFNALAVLLQVSTDSVNRTFTALIICEKGNEEAAGPGP
ENRAFTHLHNTSLFIPEGPCSHTVQKLKPQDISSITVKTLKVIPERIIDNYNKRQQPRFR
MDPPGQAISTATQELLRLAEANPGGVATLDPVNDLHLKGVDVVEDVMRQRVLQESLKDFH
CTHSPTFTEQFARVQERMKLQEELDKLLFLISDQSLTLLPEYHQRIKVLEALNYIDGSGA
VQLKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIEPHIPNTIQE
AIDRVLCVAQRIGEFQRDCGLAQTAEDFVSQFKFGLTEVVYCWARGMPFAEIAQLTDVQE
GTVVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatagacttgccagcccctggccctgatgatctgcccctgtccctgctggag
atgggctgttcagggaagtttgaggtcctcacacacccccaggccacaaacacacccttc
ccaccccagagcacgcttcctcatgggcttcctccattctgtgtggacctgaagatggag
gtggagaaacgtttcctgcaggatcctgcgtggatgcccatacacgatacaactgacgcc
ttccagaagtttcttaagctaactaaaagggacagacaagtggactcgctgctgcactgc
tctctgtctcctctgcactcaggactgtctgtagtgagagatcccaccaccggcatgctg
ctggatttcacagaggtgctaatggagcacaccggcttgtcggcgaagaactctttatcg
atgcagcggcagccggggccgccgtctgagagcctgagaggcagcaacaccaactacccc
tttctgccaggtggtatggaggagctgacgttggagcagattaagaaaaagtctgagctg
gaggaggatattgactttgagaatgacttactgacggtgcctccggggctaaaagccggc
atgaacttcagtaataaagatgccaaaactaccaaaggagacgtgaacctgctgtctttg
ttgtctacgtttgatgatgtgattgaatccgtgcctgaggagaaagagagaggctcagga
ggtgcagaggaggccaaactgcatagaactaacagccttgaggatctgggcattaaggac
acactgccgtctcctgctcctgctcctactcctgctggagcttcatctcccagcaagaag
gttggagggacactaaatagcaggacagaggagaaggaaaggaagtgggctgtgcatgtg
gacatctcctcaccgtgtgaggatttctacaaacggatccccgatcctgcttttaagtat
ccatttgagctggacgtgtttcagaagcaggcgattctcagactcgaggctcacgactct
gtctttgtggcagctcacacctctgcaggaaaaaccgtggtggcggagtacgccatcgcg
ctctcgcaaaaacacatgaccagaaccatctacacgtcccccattaaagctttgtccaat
cagaagttccgtgactttaagaacacattcggcgacgtcgggcttttgactggagatgtt
cagatcaaccccgagggctcctgtctcatcatgaccactgaaatattgaggtcgatgctg
tataacggatcggaggtcattcgggacctggagtgggttatattcgacgaggttcattac
atcaacgacgcagagcgaggtgttgtgtgggaggaagtgctcatcatgctgcctgaacat
gttagcattattttgctcagtgccacggtgcccaatgcggtggagttcagcgagtggatc
gggcgtatcaagaagaggccgatctacgtgatcagtacagtgaagaggcctgtgccactg
gagcattacctctacacaggaaacagcaccaagactcagaaagagctcttcctcctacta
gatgctacaggaagtttcctcaccaaagggtattacgcagcagtggaagccaagaaggag
cgcaccagcaaacacgcccagtcttttggcacgaagaaggtgtcacagagcaccacacca
aatcaggaccgcgccgtgtggcagaccctgctccatttcctgtcagagaggcagcagact
ccggtagtggcattcaccttttcgcgcacacgctgtgatgataatgctcgctctctcacc
tctctggacctgaccagctcggtggaaaagaacgaaatccactcctttttccataagagt
ctgagcaggctgagaggaggagaccgacagctccctcagatcctgctaatgagggacttg
ctgaagagaggcgtcgccgtgcaccacagcggcattctgcccatcctgaaggaggtcatc
gaaatgctgttctccaaaggccttgtgaaggtccttttcgccaccgagacttttgcaatg
ggcgtaaacatgccggctaggaccgttgtgttcgacagcatccgcaaacacgacggaact
ggattcagaaaccttcatcctggtgagtacatccagatggcggggagagcaggcagacga
gggctggatgctacaggcacggtcatcatcctgtgcaagactggagttcacgaaatggca
gacctgcacaccatgatgctgggcaagccgacgttgctgcagtcccagttcaggctgact
tacaccatgatcctcaacctgctgcgagtcgaggctctcagagtcaccgacatgatgcgc
agaagtttctcagagagccacagagacacacaggccaatgagagaaggatagcagagttg
aaacgtgagctttcctctctcccgcctcttgacacagagggtcagttatctgatctcctc
tcctattaccacactttgacagagctacgtattacaactgaagccctgcagcgagcagtg
atggagtcaatgaacggaatgaaggccttgtcagtgggacgggttatcgtagtcaacaac
gctcagcatttcaacgccctggctgtcctcttacaggtgtccaccgactctgtaaatcgg
accttcactgccctcatcatttgtgagaaagggaacgaagaagcagcaggacctggtccg
gagaaccgggcgttcacgcatcttcacaacaccagccttttcattccagagggtccgtgc
agtcacacagtacagaaactgaaacctcaggacatctcctccatcacggttaagactctg
aaggtcattccggagaggattatcgataactataacaagaggcagcagcctcgcttcaga
atggacccgcctggtcaagcgatttcgaccgcaactcaggagctcctgcgattggccgag
gccaacccgggcggcgtcgcgaccctcgaccctgtgaacgacctccacctgaagggtgtg
gacgtcgtggaggacgtgatgaggcagagggtccttcaggagagcctcaaagacttccac
tgcacccactcacccacttttacagagcagttcgcacgtgttcaggagcgaatgaaactg
caggaggagctggataaactgctgttcttgatctcggatcagtcactcactctgctgcca
gagtaccaccagaggattaaggtcctggaggctctgaactacatcgacgggagcggagcg
gtgcagctgaagggtcgagtggcgtgtcagatcagcagtcatgagctcctgctcacggag
ttgctgttcgagaacacgctgagccctctggccccggaggagagcgccgccctgctgtca
tgcctcgtcttcacgcagaacactcagattgagccgcacatccccaacactatccaggag
gcgatcgaccgggtgctgtgcgtggctcagcggatcggggagttccagcgcgactgcggc
ctcgcccagaccgccgaagacttcgtgtcccagtttaagtttggcctgactgaggtggtg
tactgctgggccagaggaatgccctttgcggagatcgcccagctgacagatgtgcaggag
gggacggtggtgcgctgcatccagagactggacgaggtcctgaaggaggtcagacaagca
gcccgaatcgtaggagattcagttttgggcagcaagatggaaagagcatcactggctatt
cgcagagacatcgtgttcacggcatccctttacacgcactga
DBGET
integrated database retrieval system
