Clarias gariepinus (North African catfish): 128516124
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Entry
128516124 CDS
T10780
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03320
PPAR signaling pathway
cgar04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
128516124 (rxrba)
03320 PPAR signaling pathway
128516124 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128516124 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgar03310
]
128516124 (rxrba)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
128516124 (rxrba)
Nuclear receptors [BR:
cgar03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
128516124 (rxrba)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
128516124
NCBI-ProteinID:
XP_053346404
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All DBs
Position
28:complement(20384136..20396868)
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AA seq
463 aa
AA seq
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MGDNRDSRSPDSSSVSSPASGKQSPALVSSAAAMTSLTPVTSAVSSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPINSPQINSTVSMSGLHAVSSSDDVKPPFGLKPLLGHSPGPTHS
QKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCMVDKRQRNRCQYC
RYQKCLAMGMKREAVQEERQRNKEREGEVESTHAANEEMPVEKILEAEMAVEQKIELHSD
GSSGTSSENDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASF
SHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRD
MQMDKTELGCLRAIILFNPDAKGLSNPSEVELLREKVYAALEAYCKQRYPDQQGRFAKLL
LRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaaccgagattctcgcagtccagacagctcgtcggtgtcgtccccagcatca
gggaaacaatctcctgcactcgtctcctcagcagctgccatgacctcgctgaccccagtc
acgtcggcggtcagcagtccgatcagcagcatgggatcccccttctccgtcatcagctcc
tctcttggctccccgtgcctcccggggacgccgtcagtcggctacggcccgatcaacagc
ccccagatcaactccactgtgtccatgtccggcctgcacgccgtcagcagctccgacgac
gtgaagccgccgtttggcctcaagccgcttttaggccacagccccggacccacgcactcc
cagaaacggatgtgtgcgatctgtggcgatcgctcctctggtaagcactatggcgtgtac
agttgtgagggatgtaaaggcttttttaagcgcaccgtgaggaaagacctgagctacacc
tgcagagataacaaagactgtatggtggacaagcgccagaggaaccgctgccagtactgc
cgctaccagaaatgtctcgccatgggcatgaagagagaagctgttcaggaggagcgccag
aggaacaaagagcgtgaaggagaagtcgagtccacccacgcagccaatgaagaaatgccc
gtggagaagatcctggaagcggagatggctgtagaacagaagatagaactgcattccgat
ggaagttcaggcaccagttctgaaaacgaccctgtcacgaacatctgccaggcagctgat
aaacagctcttcactctggtggagtgggccaaaagaatcccgcacttctcagaactggct
ctcgacgaccaggtcatccttctacgtgctggttggaatgagctgctgatcgcctcgttc
tctcatcgctccatcagtgtaaaggatggcatcttgctggccactgggctccacgtgcac
agaaacagtgcacacagcgcgggagtgggagccatcttcgatagggagagtgcgcacaat
gcagaggttggggccatatttgacagggttctgactgaactagtgagtaagatgagggac
atgcagatggacaagacggagctcgggtgtctcagagccatcattcttttcaacccagac
gcgaaaggcctttcaaacccaagcgaagtggaattactgagggagaaagtctacgctgca
ctagaagcttactgtaaacagagataccccgaccagcagggcaggtttgccaagctcctc
ctccgactgccggcgttgcgctccattggtttaaaatgcctggaacatctgttctttttc
aagctgatcggcgacaccccgatcgacaccttcctcatggagatgctggaggctccgcat
cagctcacctaa
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