Clarias gariepinus (North African catfish): 128516516
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Entry
128516516 CDS
T10780
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128516516 (rc3h1b)
04121 Ubiquitin system [BR:
cgar04121
]
128516516 (rc3h1b)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128516516 (rc3h1b)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128516516 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_UNK
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
128516516
NCBI-ProteinID:
XP_053346536
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All DBs
Position
1:complement(47222587..47237583)
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AA seq
1111 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGAQVPKPQPVALITNLEDTKHYDEARQCVEELALYLKPLSNARGVG
LSNTAQSMLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGTEQQQPLQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKSVSAQTLQYRKMNKRLAPRLPCGPSLLPNDEGVPL
DGVTRKHSPLTNGIVAACPQPAPQLLARGHESSPYELMRKPKMDSLSAPGSPPDPYDLIT
HLDKTGLPLPPLAVAHTRAEHLPMPKQIPGVPRGAPPLYPQQQPELFYPEARAPSGAQYD
GQYPAGAPYPYQQTQYVPPRYMRNPLPSGDAPYQESYPAYGPDRQYPPSHHSGPPFSGLG
AHQYPPPSHYDTRRHGPYAAPPPPPPPQPFGPPRDDLVRMSPVSSLDVPPTQGPPASLYH
PEAASRERYPPEGYYPPAPPHPGQIRSHIRDPYGRTQPSLDYLHRRRKELLNQLEERKVI
SPPPFAASPTLPSHTFPNDYPPEYAEDGSKAFGAREPDYAGQYSPWSCDTIGSYIGSKDP
KPKDGVGAVDIMNMEAKGLTEPPLDGQRRTAEAKDDDPIIPFGPLPTVSPFGAISRTSKT
GYQTTGPVQAMASSQTSGSKHITMTAEYPYGNHSSGWSSVSYPQHQSITSPGHFSERLPV
PTPNREQLKMELQQVNQQISQQTQIPSMEPPAAKWPVAGGVSSEQLSLELHHVEREIGKR
TREIARKNQAAQEVQYKLKATENGQSDHKAQLEELSISLGDVSNGVSNMVPGNSVSGSML
SLTNKTSSLSLCSGEQAASGSELQKNGVVHS
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtccaagcgccgcaatggaccgagttcctgctgtgtcccatctgcacgcagacg
ttcgaggagacggtacggcggcccatcagcctcgggtgcggccacaccgtctgcaagatg
tgcctgaacaagctgcaccgcaaggcctgccccttcgaccagacggccatcaataccgac
atcgagcagctgcctgttaactcggccctgctgcagctcgttggggctcaggtgcctaaa
ccgcagcctgtggcactcattactaatctggaagacaccaagcattacgatgaggcgcga
cagtgtgtggaggagctcgccctctacctcaaacctctcagcaatgcaagaggtgtgggg
ttgagtaacacagcacagagcatgctcagcagacccatgcagaggaaactggtgaccctg
gtgcactgtcagctggttgaggaggagggcaggatacgtgccatgcgtgccgctcgctcg
ctgggagagcgcaccgtcacagagctaatcctgcagcaccaaaacccccagcagctctcg
tctaacctttgggccgccgtccgtgccaggggctgccagtttctaggaccagccatgcag
gaggaggccttaaagctggtgcttctggctctggaggacggatctgctctgtcaaggaag
gtgctggtgctgtttgtggtgcagcgtctggagcccaggttcccacaggcttccaaaacc
agcattgggcacgtggttcagctgctttaccgtgcctcgtgttttaaagtgaccaagaga
gacgaggactcgtccctgatgcagctaaaagaggagttccggacatacgaggcgcttcgg
cgggagcacgactctcagatcgtccagatcgccatggagggaggtctgcgcatcgcccct
gaccagtggtcctctctgctctacggggatcagtcgcacaagtcccacatgcagtccatc
atcgacaagttgcagacgcctgcatcgtttgcgcagagtgtgcaggaactgacgatagcg
ctacaaaggacaggcgatcctgccaacctgaaccggctcagacctcacttagagctgctg
gccaacatcgaccccagtccagatgctccccctccaacatgggagcagctggagaagggc
ctggtagcggtgaagacggtggtacacggcctggtggacttcatccagaaccacagcaag
aagggcacggagcagcaacagccgctgcaacacagcaagtacaaaacctacatgtgccgt
gacatgaagcagaaagggggatgcccccgtggggccagctgcaccttcgcccactcgcag
gaagagcttgagaagtcagtatctgctcaaacgctacagtaccgtaagatgaacaagcgt
ctggctccgagacttccatgcggtccgtccctgctgccgaacgacgaaggcgttcctctg
gatggcgtgacccgtaaacactctccccttaccaacggtatcgtggcagcgtgtccccaa
ccagcgcctcagcttttagcacgaggacacgaatcttcaccctacgagctcatgcgcaaa
cccaaaatggacagcctgagcgcccctggatctccccctgatccgtacgacttaatcact
catttggataagactggcctgcccctgccgcccctcgcggtcgcccacacaagggctgag
cacctgcccatgcccaagcagatccctggggtccctcgtggtgctcccccgctctaccct
caacagcagcccgagctcttctaccccgaggccagagcaccatcaggagcgcagtatgat
ggccagtaccctgcaggtgccccgtacccctaccaacaaactcagtatgtgccaccccgc
tacatgcgcaaccctctaccctccggtgacgccccctaccaggaatcgtaccctgcttac
ggccccgaccgccagtaccctccttcccaccactcgggcccgcctttctccggcctgggt
gcccaccagtacccgcccccctctcactacgacacccgtcgacatgggccttacgcggcc
ccgcccccgcctccaccccctcagcccttcgggccgccccgggacgacctggttcgcatg
agccccgtgtcgtccttggacgtgccgcccactcaagggccgcccgcttctctctaccac
cccgaggcagcatcccgagagaggtatcctccagaggggtactacccacctgcaccacca
catcctgggcaaatcaggtcccatatccgggacccgtatggacgcacccagcccagtctg
gactatttgcaccgcaggcgtaaggagctactgaaccagctggaggagagaaaagtcatt
tctcctccaccatttgcagcctccccgacgctgccctctcacaccttccccaacgactac
cctccggagtacgccgaggacggctccaaagctttcggcgcccgagaacccgactacgcc
gggcagtactcgccatggtcctgtgacaccatcggctcctacatcggctccaaagatccc
aaaccgaaggatggcgtgggcgcagtggatataatgaacatggaggcaaagggtctaacg
gagccgccactggatggacagcggcgcacggcagaagccaaagacgacgatcccatcatc
ccgttcggccctctgccaacggtgtcgcccttcggtgccatctcccgcacatcaaagacg
ggctaccagaccacaggcccggtgcaggccatggcgtcctcgcagacctctggctccaaa
cacatcaccatgacggccgagtacccgtacgggaaccacagtagcggttggagcagcgtg
tcgtaccctcaacaccagagcatcacctctccgggacacttcagtgagcggctgcccgtg
cccaccccaaatcgagagcagctgaagatggagctccagcaagtcaaccagcagatcagt
cagcagacgcagatccccagcatggagcctccagccgccaaatggccagtggcgggcggc
gtgtccagtgagcagctcagtcttgagcttcaccacgtcgaaagggaaattggaaagcgc
acgcgtgaaatcgctaggaaaaaccaggcagcacaggaagtccagtacaaattaaaagcc
actgaaaatggtcagagtgaccataaagcccaactggaggagctgtcgatatcactggga
gacgtctcgaatggcgtgagcaacatggtgccaggcaacagcgtctcggggtccatgctg
tccttgaccaataagacatcttcactctctctgtgctccggagagcaagcagcgagcgga
tcagagctccaaaagaacggcgtcgttcattcttaa
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