Clarias gariepinus (North African catfish): 128516954
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Entry
128516954 CDS
T10780
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128516954 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128516954 (smarcc1a)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128516954 (smarcc1a)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128516954 (smarcc1a)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128516954 (smarcc1a)
PBAF complex
128516954 (smarcc1a)
GBAF(ncBAF) complex
128516954 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
HEAT_GCN1
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
128516954
NCBI-ProteinID:
XP_053346627
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MATTGTAATAAGGAGGSAAGQAGPGASAGRKKDGGPSAKFWESAETVSQLETVRNWIGKH
YKKYVQADSPSCKSLAGLVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKAGGALCHIL
GSAYKYKSEQGWRRFDLQNPSRMDRNVEMFMNIEKTLAQNNCLTRPNVYISSDMDPKQAG
KLKDIIKRHQGSITEDKSKATHLICPSPAQTEEEEWLRPVMRKDKQVLVHWGNYPDSYDT
WVSTSDVDGEIEDPPSSEKPWRVHAKWVLDTDAFNEWMNEEDYEVDENRKPVIFRQRIFP
KEEESSRTPDRKERKSLAGGKKRRRSPSPPSTPAESRKKGSKKGSAGIHWKRRGHRDDDE
QDEDLTKDMEDPSPVPGMEEVSLPKNVNQKKDSENAPVKGGTMADLDEQEDASVGSAGKD
DEEQGKAEVNRLMDSGEDNVTEQTHHIIIPSYSAWFDYNSIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLINYQVDAE
SRPMPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKSKDKVTDLQNFGLR
TDMYSKKIPKSKGGSGTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLESSEASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAAKSTGKVDPSYGLDSSGIAGTAPEEPEKCETTETEKMET
DSESQQREKSESKDETEKTSDAAEKPAEGEKIKSETPEKAEGEEEEGDAGDTTEASTADE
KDKEESMEVTEGVKEGEETSTEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVEE
RKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKY
AEMKARQQMEQQAAAAAAAAQHGQLAPPPHHGGPQSGHGAPPPPHGAPPPPHIPPPGLHP
GSGYPSLHHPMGPHHPPQTGPMVGPGGQPMPGRMMPGAPPGAMPVAPPGAMPPMMGPRHP
GAPNGMYPGPPPPAPSAQPDGMPPATSLPVRPPEN
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacgggaactgcggcgactgcggcgggcggcgcgggcggatcagcggccggt
caggcgggacccggggcttcagcgggcaggaaaaaggacggagggccgtcggcgaagttt
tgggagagcgctgaaacggtttctcaactcgagacggttcgcaactggatcggaaaacac
tacaaaaagtatgtccaggccgactctccgtcctgtaaatctttggccgggctggtggtt
cagctgctccagtttcaggaggatgcgttcggccggagagtaagcaaccctgccctcacc
aaactgcccgccaaaagcttcttggactttaaagcaggtggagctctgtgccacatcctc
gggtctgcgtacaagtataaaagtgaacagggatggcggcgattcgatctacagaatcca
tccaggatggacagaaatgtggagatgtttatgaacattgagaaaactcttgcacagaat
aactgtctgactcgaccaaacgtctacatctcatccgacatggacccgaagcaggccggc
aagctgaaggacatcatcaagagacatcagggctccatcactgaagacaaatccaaagcc
acacacctcatctgtccatctccagctcagacagaggaagaagagtggctgcgtcctgtt
atgcgtaaagacaagcaggtgctggttcactgggggaattatccagacagttatgatacc
tgggtgtccaccagtgatgtggacggtgaaattgaggatcctccaagctcagagaaaccc
tggagggtgcatgccaagtgggttctggacacggacgcctttaacgagtggatgaacgag
gaggactatgaagtcgacgagaacaggaagccggtgatcttccgccagcgcatcttccct
aaagaggaggagtcttcccgtacacctgatcgtaaggagcgaaagtctctggctggaggg
aagaagaggaggcgctccccgtcccccccgagcacccccgcggagtctcgaaagaagggc
agcaagaaagggagcgccgggattcactggaagcgtcgaggacatcgcgatgatgacgag
caggatgaagatctcaccaaggacatggaggacccgtcacctgttccgggaatggaggag
gtttctctgcccaagaacgttaatcagaagaaggacagcgagaacgctccggttaaagga
gggaccatggctgatctggatgaacaggaagacgcctctgtgggctctgcagggaaggac
gatgaggagcagggtaaagccgaggtgaaccgtctgatggactctggtgaggataacgtg
acggagcagacgcaccacatcatcatccccagctactccgcctggttcgactacaactcg
atccatgagatcgagagacgggccctgcccgagttctttaacgggaaaaacaagtcgaaa
tccccagagatatatctggcttatcgtaacttcatgatcgatacgtatcggctgaaccct
caggagtacctcacctccacttcctgcaggcgcaacctcactggagacgtgtgtgccgtc
atgagggtgcacgcgttcctggagcagtggggtctcattaactatcaggtggatgcagag
agcagaccgatgcccatggggcctccacccactccacactttaacgtcctggctgataca
ccgtcaggcctcgtccctctacaccatcgccccccgcaggttcccccggctcagcagatg
ctcaactttccagagaaaagcaaagataaagtgacagacctgcagaactttggcctcagg
acagatatgtactccaagaagatccctaagagtaaagggggaagcgggacgcgagagtgg
accgagcaggagactctgctgctgttggaggctctggagatgtacaaggacgactggaac
aaggtgtccgagcacgtgggcagccggacacaggacgagtgtatccttcactttctgcgt
ctccccatcgaggacccgtacctggagagttcggaggcgtctctcggacccctggcctat
cagcccgtccccttcagccaatcaggaaaccccgtcatgagcaccgtggccttcctcgca
tccgtggtcgatcccagagtggctgcggctgccgctaaggctgctctcgaggagttctcc
cgtgtgagggaggaggtcccagccgagctagtcgaggctcatgtgaagaaagtgcaggag
gcagcaaagagcacggggaaggtcgacccctcttacggcctggacagcagcggcatcgcc
ggaacggcaccggaggagccggagaaatgcgaaaccacagaaacagagaagatggaaaca
gattcagagtctcagcagagagagaagtcggaatctaaggacgagacggagaagacgagt
gatgcagctgagaaaccagcagaaggagagaagataaagagcgagacacctgaaaaagct
gagggtgaggaagaggagggtgacgcaggagacacaactgaagcgagcacagctgatgag
aaggacaaggaggagtcgatggaggtgacggagggagtgaaggagggagaggagacatcg
acggaggagggcaagaagaagctggagctcgatatcggagagggcaacatcgccaccgct
gcggctgctgcgctcgcctccgctgccaccaaggctaagcacttggccgcagtggaggag
aggaagatcaagtctctggtggctctgctggtggagacgcagatgaagaagctggagatt
aaactgcggcacttcgaggagctggagaccatcatggaccgcgagaaggaggcgctggag
ttgcagaggcagcagttgctgacggagagacaggcgttccacatggagcagctgaagtac
gcagagatgaaagctcgccagcagatggagcagcaggcggcggcagcggcggccgcggct
cagcatggacagctagccccgcctcctcaccacggaggtccacagtctggacatggagct
ccgcctcctcctcacggtgccccacccccaccccatatcccccctccaggtctgcaccct
gggtctggatatccttcactgcaccaccccatggggccccaccatcctccacagacaggg
ccgatggttggacccggaggtcagcccatgcctggccgtatgatgcccggcgcgccccct
ggtgcgatgcccgtagctccgcccggcgccatgccacccatgatgggccccagacacccc
ggagccccgaacggcatgtatcctggcccccctcctcctgctccttctgcacagcctgat
gggatgcccccggcgacatcacttcctgttcgccctcctgaaaattaa
DBGET
integrated database retrieval system
