Clarias gariepinus (North African catfish): 128516958
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Entry
128516958 CDS
T10780
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04350
TGF-beta signaling pathway
cgar04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
128516958
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
128516958
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128516958
Cell adhesion molecules [BR:
cgar04515
]
Immunoglobulin superfamily
DCC/UNC5 family
128516958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
ig
Ig_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
NDNF
fn3_2
Ig_4
Izumo-Ig
V-set_CD47
SusE
GBS104-like_Ig
REJ
DUF4912
DUF4834
Motif
Other DBs
NCBI-GeneID:
128516958
NCBI-ProteinID:
XP_053346635
LinkDB
All DBs
Position
2:30076232..30195098
Genome browser
AA seq
1444 aa
AA seq
DB search
MAEQSALLLLSLSVLTSLFSEASLAHKGSAVRPFTLLRFSVEPVDVLAVRGSPAVLNCSV
VSESPVRVEWKKDGTFLNLVADERRRLLPDGSLFISTVEQSVHNKPDEGVYQCVASIDNL
GTIISRAARVTVPGLPQFSSQPESVSVHPGGNEVLICEVSADLAPFTHWQKNGQAVQMDM
RLLKLPHAALVISNASQADAGAYRCVIEGLGPAKMSQSSQLQLLPDTAVDERMEVLIGPS
AASKPVGETVLLPCVVKGFPLPVVRWLRNSRIIDESDERFAVIGGGSLQIVNVTEDDAGT
YSCQADNGNETIETKAELNVQVPPRFLKKPSSMYAHEAMDIIFECNVVGSPAPTVKWVKN
GDAVIPSDYFKIVNQHDLQVLGLVKSDEGFYQCVAENEVGNTQASAQLIILDLDVAIPTS
PVPSLTSATTDHVDSGERSGSTPSPPRDLVASLVSTRFIKLTWRVPAETNGDNLTYSVFY
SLDGSSRERVENTTAPGELQVTIDNLIPDTKYTFRVLASNRNGLGESSAPLTVATQPEVQ
VPGPAPNLQAVAITPSTVTLTWERPPTGNGEIQTYKLYYSEKGKDVEQYIDVLGLSYTMT
GLKKFTEYSFRVVAYNKHGSGVSTDDLSVQTLSDVPSAPPQNISLEVQNSRSIMVRWQPP
PSGAQNGELTAYKIRYRKAGRKGDASEIITSQLFQLIDGLERGTEYLFRLSASTVNGSGP
ATEWIPAETFESDLDESQVPGMPSSLQVRPLVNSIVVSWTPPENQDIVVRGYSIGYGIGS
PHSQTIKVDHKQRYYSIENLDPSSHYVITLKAFNNMGEGIPLYESAITRPQSDPIEPDID
LFKMYHHTPHTPAPEPSPMLPPVGVQASVISHDAIKVSWADNSLSKNQKITDSRYYTVRW
KTNIPANTKYKVANSTTLTYTVTNLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTLETLPT
SAPKDVTLVSKEGRPRTININWQPPSEANGKITGYIIYYSTDVNAEVHDWVVEPVMGNRL
THQIQELTLDTMYYFKIQARNSKGMGPLSDTVHFRTPKAEPSDKMSSDQVGIPGKPGGRS
PLPDQELGSPLDKPGITGRQDNHMLVIIIIVSVGVFTIITVVVGAVLCTRHSNSHQKKKR
AASKSSIASHKYKSTSKDLKPPDLWIHHERLEMKSIDKSPEPNVLMTETPIPRSTHEPSS
SEAAHQRQNAYRGHEVEETVSTLAGRRGVRPKIMMPFDSQPPQPVISAHPIHSLDHLHHH
HHHHYHPPPRGYLHHQISLRAPATPSSSGPYLDRPPSSESVRTQPSATELPVAPSVAELQ
HTEVLIKEDEPHCYKPPTAHVHPTHPMKSFTVPTVTVSTHSPPSSALPCTVLMPPPVPSV
KTACIGTLSRARGPVAVTVPSAPDQSETSKMLPHKESAYRTDELSEEMAHLEGLMKDLNA
ITTA
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagtccgcgcttctgctcctctcgctttcagttctcacctctctcttttcc
gaggcttctcttgcacacaaaggttctgcggtgaggccgttcactctactgcggttttcg
gtcgagccggtggatgtgttagctgtacggggttctcctgctgtcttgaactgctcggtg
gtgagcgagtccccggtcagggtggagtggaagaaggatggcacttttctcaacctggtg
gcagacgagcgcagacgcctcctccccgacggctctctgttcatcagcaccgtggaacag
tctgttcacaacaagccagacgagggcgtgtaccagtgtgtggcctccatcgacaacctg
ggcaccatcatcagccgcgccgcccgagtcaccgtgccaggtctgccacagttttctagc
caaccagagagtgtgtctgtacatcctggaggtaacgaggtgctcatctgtgaggtgagt
gcggatctcgctcccttcacgcattggcagaagaacggccaggctgttcagatggacatg
cgtttgttaaagctgccccatgccgctctggtgatcagcaacgcttcacaggccgatgct
ggtgcgtatcgatgcgtcatagagggactgggaccagccaagatgagccaaagttctcaa
ctacagcttttaccagacaccgccgttgatgagagaatggaagttctaataggcccgtct
gctgcgtccaagccagtgggagagacggtgctactgccatgtgtggtgaagggtttccca
ctccctgttgtgcgctggctacggaacagcaggatcattgatgagagtgatgaaaggttt
gctgtgattggtggaggcagtctgcaaattgtgaacgtgactgaggatgatgcaggtacc
tatagctgccaggcagacaacggcaatgaaaccatcgagaccaaagcagagcttaatgtg
caagttcccccgcggttcctaaagaaaccctcgagtatgtacgcacacgaggccatggat
attatctttgagtgcaatgtcgtgggctcccctgcccccaccgtgaagtgggtgaagaat
ggagacgcagtcatccctagtgactacttcaaaatagtgaatcagcatgatttgcaggtg
ctgggcttggtgaagtcggatgagggtttttatcagtgtgttgctgagaatgaggtggga
aacacccaggccagcgcccagctcattatcctggatctggacgttgccatccccacgtct
cctgtcccatcactgaccagtgccactactgaccatgtagactctggggagcgttcaggc
tctaccccgtcacccccacgtgatctcgtggcttccctcgtctccacacgcttcatcaaa
ctcacctggagggttccggccgagacgaatggagacaacctcacctattctgtcttctac
agccttgatggctccagcagggagcgtgttgagaacaccacagctccaggagaactgcag
gtcaccattgacaacctcatccccgacactaagtacacattcagggtgttggcgtccaac
agaaacggcctgggcgaaagctctgctcctcttacagtggccacccaacctgaagtgcag
gtaccaggacctgctcctaaccttcaggctgtagccattacacccagtactgtcactttg
acctgggagagaccacccacagggaacggggagatccagacctacaagctttattacagt
gagaaaggaaaggatgtggaacagtacatagatgttttaggtttgtcttacacaatgacg
ggactgaagaagttcacagaatacagtttcagagtcgtggcttataacaagcatggatct
ggagtatctactgatgacctcagtgttcagaccctttctgatgtaccaagtgctccgcct
cagaatatctctctggaggtccagaactcgaggagcattatggtacgatggcagcctcct
ccttccggcgctcagaatggcgagctgacagcttataaaatccgctataggaaggctgga
aggaaaggagatgcatctgagattattaccagtcaactctttcagcttattgatggcttg
gaaagaggaactgagtatttattccgcctctcggcctccaccgtgaacggcagcggcccg
gcgaccgagtggatccccgccgagaccttcgagagcgatttggacgagtctcaggtacct
ggaatgccaagttcgctgcaggtgcgcccgctggtgaatagcattgtggtgagctggaca
cctccagaaaaccaggacatcgtagtaagaggctacagcatcggctatggtataggcagc
cctcactcacagaccatcaaagtggaccacaaacaacgctactacagcattgaaaacctg
gacccaagctcacactatgtgattacgctgaaggctttcaacaacatgggagaaggaata
cctctgtacgagagcgccatcaccaggcctcaatcagatcccatagagccagatattgat
ttatttaaaatgtatcatcatacccctcataccccagcacccgagccttcccccatgctt
cccccagtgggcgtgcaggcctccgtcatcagccacgacgccattaaagtctcctgggct
gataactccctgtccaagaaccagaagatcaccgattccagatactacacagtccgctgg
aagaccaacattccagccaacaccaaatataaggttgccaacagcaccactctaacatac
acagtaacaaacctgaagcccaacacactgtacgagttctccgtcatggtgaccaagggc
cggcgcagcagcacgtggagcatgaccgctcacgggaccaccctggagacgcttcctaca
tctgcacccaaagacgtgacattggtgagtaaagagggtcgtccacgcaccatcaacatc
aactggcagccaccatctgaggccaatggcaaaatcacaggctacataatttactacagt
actgacgtgaatgcagaggtacatgactgggttgtcgagccggtgatggggaacagactg
acccaccaaatccaggagctaaccctagacaccatgtattactttaagatccaagcacgc
aactcgaaaggcatggggccgctttctgacaccgtgcacttccgcacacctaaggctgag
ccatctgacaaaatgtcaagtgatcaagtaggcattccagggaagcccggtggacgttct
cccctgccagatcaggaacttggatcccccttagataagccaggaatcacaggcagacag
gacaaccacatgttggtgatcatcatcatcgtgtctgtaggagtgttcaccatcatcact
gtggtagtgggtgcagtcctgtgtacacgccactccaactcccatcagaaaaagaagcga
gctgccagtaagtccagtatcgcctctcacaagtataaaagcacctcaaaagacctgaag
cctccggacttgtggatccaccatgagcggctggagatgaagtctatagataaatcaccc
gagcccaacgtgttgatgacagagacacccatcccccgcagcacacacgagccgtccagt
agtgaggctgcgcaccaaagacaaaacgcctaccgaggtcatgaggttgaggagacagtg
tctacactagcaggaagaaggggagtgagacccaaaataatgatgcccttcgactctcag
cctccacaacctgttattagcgcacatcccatccactctctagaccaccttcatcatcac
catcatcatcactatcaccctccaccgcgtggttaccttcatcaccagatcagcctgagg
gctcctgctacaccctcttcctctggcccttatttagacagaccaccttcttcagaatct
gtaaggactcagccttccgccaccgagctgccggtggcccccagcgtagccgaactgcag
cacacagaggttctaattaaagaggacgagccacactgctataaacctcccacagcccac
gtccaccccacacaccccatgaagagcttcaccgtgcccactgtcactgtgtcaacccac
agcccacccagttctgccctgccctgcaccgtgctcatgcccccaccagttcccagtgtg
aagacggcatgtatcggcaccctgagcagagctcgtggccctgtggctgtcaccgttccc
agtgctcctgaccaatcagaaaccagcaagatgctgccgcataaagagtctgcctacagg
acagatgagctgtcagaggagatggcacatctggagggcttgatgaaagacctgaacgcc
atcacaacggcctga
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