Clarias gariepinus (North African catfish): 128516979
Help
Entry
128516979 CDS
T10780
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04621
NOD-like receptor signaling pathway
cgar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128516979 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128516979 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgar04054
]
128516979 (nod1)
Pattern recognition receptors [BR:
cgar04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128516979 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
NOD2_WH
LRR_4
AAA_16
AAA_18
AAA_22
NPHP3_N
NTPase_1
AAA_30
ATPase
SLFN-g3_helicase
AAA_7
T2SSE
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
128516979
NCBI-ProteinID:
XP_053346671
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MVLMMDCVDQDGAEAPQDATRLLTHHREVLVEHVKNTQCILDNLKMNGFICNEDIEIIQR
SATKTEQVRKILELVQSKGEEASSYFIQILHQAYDAFIDLRPWFNKIHYKPAECVKDIPV
INTDPISRYSEKLRQELCRDTQFLTSYSHREETRLEELYTDTQMEILNERGESLGFLQNL
DDILGEEGVFNQQAETILITGDAGVGKSILLQKLQNMWSKRELNTRAKFFFTFRCRMFSF
FKENDEISLKDLIFKHNCYPDEDPDGEVFGYILRFPESVLFTFDGYDEIQMDFELENMPE
VASPEERTHPLLVLMNLLRGKLLKGSRKILTARTGTEIQSRVIRKKVFLRGFSPEHLRKY
LSHHFPQKEQRDMVSVQLDANPHLCGLCSFPLFSWIIFKSFKHLQSMYDDVELPDSCITL
TNVFLLLSEVFLSRGSPSAGLLKRSTRCTTDTFKSGLKMLSAFAKLALLGLEKSSFIYTH
DEVFSCGLSDDDVQVGFLRPVSHYDTCGTLATYEFLHVTLQAFLAAFCLIIDLDIIPTGI
LRFFSRCEYQKTSHFTCLSCLCRSSHPRNSDPFQTNEHFQYTNLFLCGLLSKSNAVLLEH
LIPPASLKRKRTALKSYLSSSVKTHLSGLPRCPSSDSTEKKVHVMPNFLWMLRCIFETNS
EDVARLTAKGISADYLKLAYCNIYSADCSALNFVLHHHRKCLAVDLDNNNINDYGVKQLT
PSFRKMTIIRLCVNQLTDSSVEVLAAELIKYKIVKVLGLYKNHITDAGAKLVAQIITECP
HLRIVKLGYNNITAVGAAFLAEAIQKSKSIFDIGMWGNSIGDNGAHAFAEAIKNHGSLTN
LSLSANGITSEGGRSLARALAQNSSLHIFWLIQNNISDDAAEELAKAFQKNSALTHLMLI
DNKFSVCGAEQLTEGLKHNTTIKEVNLKGNQISVEEETRFIVEKRLRFC
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggttctgatgatggactgtgtggatcaggatggagccgaagctcctcaggacgccacc
aggttactgacacatcaccgagaggttttagttgaacatgtgaaaaacacgcagtgcatt
ttagacaatttaaagatgaacggcttcatctgcaatgaagatattgagatcatccagcgt
tcagctactaaaacagaacaggtgcgtaaaatcctggaactggtgcagagtaaaggcgaa
gaggcttcttcatattttattcagattctgcaccaggcgtatgacgcgttcattgacctt
cgtccttggtttaacaaaattcactacaaacctgctgagtgtgtgaaggacatccctgtg
attaacacagaccctattagcagatacagtgagaaactccgacaggaactctgcagagac
actcagttcctcacctcatactctcacagggaggagacgcgtctggaggagctttacaca
gacacgcagatggaaatcctgaacgagagaggagagagtctgggcttcttgcagaatctg
gatgacattctgggagaagaaggcgtgttcaaccagcaggctgagactatcttaatcaca
ggtgatgctggagtgggaaagtccattctgctccagaagctccagaacatgtggtccaaa
agagagttgaacaccagagcaaagtttttcttcacatttaggtgcaggatgtttagcttc
tttaaggagaacgatgagatctcactgaaggatctgattttcaaacacaactgttatcca
gatgaagacccagatggagaggtgttcggatacatcctgcggtttccagagtctgtactt
ttcacatttgatggatatgatgaaatccaaatggacttcgaactagaaaacatgccagag
gtggcttctcctgaggaaagaacacatccacttttagttctcatgaacctgctgagagga
aaactgctcaaaggttctcgaaaaatcttaacggctcggaccggcacagaaatccagagc
agagtgatccggaagaaagtgtttctgagaggtttctcaccagaacatctcagaaaatat
ctgtctcatcattttccccagaaggagcaaagggacatggtgtctgtacaactggacgcg
aaccctcacctctgtggtctctgctctttcccattgttcagctggatcattttcaagagc
tttaagcaccttcagagcatgtacgatgatgttgagctgccggattcgtgcatcacactc
accaacgtcttcctcctgctgtcggaggtgttcctgagccggggcagtccaagcgctgga
ctgcttaagagaagcacacgctgcaccacagacacgtttaaatcagggctgaagatgctc
tctgcctttgctaagcttgctctgcttggtctggaaaagagcagcttcatttacactcat
gatgaggttttttcctgtggcctgagcgatgacgatgtacaggtgggatttctgaggccc
gtcagtcactacgacacatgtggcactttggcgacgtacgagtttctccatgtgaccctg
caggcatttctggctgcattttgtcttatcatagatcttgacatcattcccactgggatc
ctgaggttcttttctaggtgtgagtatcaaaagacatcccactttacctgcctgtcctgt
ttatgtaggtcgtctcacccaagaaattcagatccttttcaaacgaacgagcactttcag
tacacaaacctgttcctgtgcggcctgctgtccaaatctaatgccgttctcctggagcac
ctcatacccccagcatccctgaagagaaagcgcacagctctgaagtcctacctctcatcc
agtgtaaagacacacctgagtggcctgcctcgctgcccgagcagtgactccactgaaaaa
aaagtgcatgtgatgccaaacttcctgtggatgctgcggtgtatatttgagacaaacagt
gaggatgtggctcgtctcacagctaaaggaatctcagcagattacctcaagctagcgtat
tgcaacatctactcagccgactgcagcgctcttaacttcgtacttcatcaccacaggaag
tgtttagcagttgatctggacaacaacaacatcaatgactatggtgtgaagcagctcacg
ccttccttcagaaaaatgaccataatcaggctctgtgtgaaccagctcaccgacagcagt
gtggaagttttggctgcagaactcatcaaatacaaaatcgtaaaggttttgggactttac
aagaatcacatcacagatgcaggagcaaaactggtggcgcagatcatcacagagtgtcct
catctgagaatcgtcaaacttggatataacaacatcacagctgtgggtgcggcatttctt
gctgaagcgattcagaaaagcaaatcgatctttgatatcggcatgtgggggaacagcatc
ggagacaacggagctcacgctttcgcagaggcgataaagaaccacggcagcttaaccaac
ctcagtctgtcggcaaacgggatcacctcggagggaggaaggagtttagcgagagcacta
gctcagaattccagccttcacatcttctggctgattcaaaataacatctcggatgatgca
gcagaggagctagcaaaagcatttcagaaaaattcagctcttacacaccttatgttaatc
gacaataagttttcagtttgtggagcagaacagctcactgaaggtctgaaacacaataca
acaattaaagaagtcaatttaaaagggaaccagatcagcgtggaggaagagacccgtttc
attgtggagaaaagacttcgattctgctga
DBGET
integrated database retrieval system
