Clarias gariepinus (North African catfish): 128518447
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Entry
128518447 CDS
T10780
Name
(RefSeq) synaptopodin-2-like isoform X1
KO
K24066
synaptopodin-2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128518447
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cgar04990
]
128518447
Domain-containing proteins not elsewhere classified [BR:
cgar04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
128518447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
128518447
NCBI-ProteinID:
XP_053347527
LinkDB
All DBs
Position
1:complement(33011779..33031243)
Genome browser
AA seq
1691 aa
AA seq
DB search
MSAQDYACVTVRGRAPWGFQLRQSDTEPHRGVHVHQVEEDSHASIAGLCEDDELVSVNGV
SCSSLSLPEVIVLIEKATDCLQLLVKRCRSYLQQKSESVNTTPQASWRELREPYKSENPD
EAHYRGTNNDTECPAGKTMVRTQFCIPAPKDRAGPNKCDSSDGAPRLEITPGGVVELQLL
LSQTTLEDPGCTSLGSALGVKGDLCHQINTENDNVKASAPVSTFYIPLHEREPLGQRGVL
VSSPSALLGQVEVTIQPSGRDSGRERVGAGGTEATANEQQDYDEGEGGQTGEDPTSFTVS
FGIPSEQEDSESEKELNKPNKHRARHARLRRSESLSEKQVKEAKSKCKRIALLLTAAATN
PNNKGLLMFKKHRQRAKQYTLVSYGTGESEPEFDDEDDENLDQETHAVEFTVLATSETEI
DEDFFTNSSGHKNIVTFDLDTGLLEIERKLHNQEDMNALPETKGKGALMFAQRRQRIDEI
SAEHEEMRSKGIPVEGIQQAEKNYQEVNPPSCIQTNDNQNFMDVNVHHQQQQQQQQQQHL
YQQYQEQQHQQQQQHQYQEYQQQMQYHQQQQHYQQQQECMQGQQYQSQQYHQQQQQVQQY
FQNGVSSHQTNVVQSSVINRSAKPFSVQNREAVQFSPSANQEQSYYSQGQVEQIASRDER
ISVPAIKTGILQDTRRKNKAKPMFTFKEPQKVAPNPELLNLLNRNERKTGFDSGTEEDHL
SLGAEACNFLQSTKLKNKTPPPVAPKPHMHPGTPPWSPQPETANQQFHQDAENNTPVTTR
DPVPAMESSAILEEEPSRAPASDQQEASIKLNSQVQAEAVETWGLSETQIQSGQQIDSWH
ENQSQPQLHAKPEPVVSSWAPHSTQATEQSPVTNWGPANVPSQVLAQNQSQMQPAWVTQS
QVLSEVQPSSSVQTQSQVQPSWLTQSQLQHQPQSQSQMNTWVTAPSQSPHQPPWAQSQGP
GQLSVNWSQDQDQPQVQPSWAQQQQQESQPIPPWTASQQHPQSPWIQPPSQPQPQPQPAW
VSQNQQQTLPQPPLNTWNQSQSVVQTQPSWTHQAQPSSQTPAQMQQPQNPWTSLPPQPQP
QPTWAQPQQTMNSWATEQNKTQPSWNQTQSPVHTQPTWSHPSPQQTLPQSQSQTVLSTWT
PQPQQSPLVGSNESHKLSQPFKSWSPPQTTQTPPPHQLNLNTPRTKVPSHMPAGKMPGMG
SAFEMPALRGKGAELFAKRQSRMEKYVVDSSTVQANKARSLSPSPSLPASWKYSPNCRAP
PPLAYNPLQSPSYPLSAVKQPPSSSSNAKSKNKATEKGKPASKPLNVLDVMKHQPYQLNS
SLFTYGPAAEKLAAEKEAAQKLAAQKAAEIQAQTESQVQPQVPDPYAFIPQQPQPPQQPY
AMPISSPAMHDGPYHHNPNNYQPTQNAYQQDPYQQIYNQPHAYQQPPSNTYQHPPNIPYQ
QPPSYQAGPYPASQAPCYQPTPSSYVVPPCPVTERADSATGSSVLAAPKPKFSAKKSDAQ
ALGRSSSLSPPVRLSPMGLGSRSASVSPSPTPSSHATYTSRSTERQIFWQEKGRKPPTPW
EAASRHPLGLVDEAFAHQDMHHSIASNLRSAANRRMLPEPPAEWKAKVAYDPPPKSQGWR
MSQSSFSFLSPTKSTASAPASPVPYGSHLRQSQPPRSMTEASLGSSMSGPQNRRSLGQSI
YRSTYSNTLRW
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcaggattacgcatgcgtgacggtgcgggggcgcgcgccctggggcttccag
ctgcgccagagcgacacggagccgcaccgaggcgttcacgtgcaccaggttgaagaagac
agccatgcatccatagctggtctgtgtgaggatgatgaacttgtgtctgttaatggagta
tcctgctccagcctcagtctccctgaggttattgttctcattgagaaagccactgactgc
ctacaactgcttgtaaaaagatgccgttcataccttcaacagaagtctgagtcagttaac
accacaccccaggcttcctggagggaactgagggaaccctacaaatctgagaacccggat
gaggcacattacagagggacaaacaatgatacagagtgtcctgcaggaaaaaccatggtc
cgaacccaattttgcattccagcccccaaggacagagctggaccgaacaaatgtgactct
agtgatggagcacccaggttagaaatcacaccagggggggtagtggaactgcagttgtta
ctctcgcagaccaccctggaagaccctggctgtacctcattaggaagtgctcttggagtt
aaaggagacctgtgccatcaaataaacactgaaaatgacaatgttaaagccagtgcacca
gtctctactttctatataccattgcatgaaagagagcctctgggtcagcggggtgtgctt
gtcagttctccctctgctttactgggacaggtggaagtcaccatacagccgtctgggagg
gactctggaagagaaagagtgggggctggtgggacagaagcaacagctaatgaacaacag
gattatgatgagggagaaggagggcaaaccggcgaagatcccacctccttcacggtctcc
ttcggaattccatcagaacaggaggactctgagtcagagaaggagctcaacaagcccaac
aagcaccgggcaaggcatgccaggctcagacgaagtgaaagcctgtctgagaagcaagtg
aaggaggccaagtctaaatgcaagcgtatagctctcctcctgactgctgctgcaaccaac
ccaaataataaggggttgttaatgttcaagaagcatagacaaagggccaagcagtacaca
cttgtaagctacggaactggagagagtgaaccagaatttgatgacgaagatgatgaaaac
cttgaccaggaaacacatgctgttgaatttacagttctagctaccagcgaaactgaaatt
gatgaagattttttcacaaattcctcaggccacaaaaacattgtaacttttgatttggat
actggactgcttgagatagagcgcaagcttcacaatcaagaggatatgaatgcactccct
gaaactaagggcaaaggggccctgatgtttgcacagcgcaggcaacgtattgatgaaata
tcagctgaacatgaagagatgagaagtaaagggattcctgttgagggtatacagcaagcc
gagaaaaattaccaagaggtgaatccgccatcctgcattcagactaatgacaaccagaat
tttatggatgtaaatgtgcaccatcaacagcaacagcaacaacaacaacaacaacacctg
taccagcaataccaagagcagcagcatcaacagcaacagcagcatcaatatcaagaatat
caacagcaaatgcagtaccatcagcagcaacagcattatcagcaacagcaagaatgtatg
caggggcaacaatatcagtctcaacagtaccaccaacaacaacagcaggtacaacaatac
tttcaaaatggtgtgtctagtcaccaaacaaatgtagtgcaatcatcagtcattaataga
agtgccaaaccattttcagttcagaatagagaagcagtccaattttccccttctgcaaac
caagagcagtcttattattctcaaggacaggtggaacaaattgcttccagagatgagcga
atttctgtacctgcaatcaaaacagggatcttacaagatactagaagaaagaacaaagct
aaacccatgttcacttttaaagagcctcaaaaagttgctccaaatccagagttgctgaat
cttctcaacaggaatgaaaggaagacaggctttgattcaggcacagaggaggatcatcta
agcctgggtgcagaagcctgtaactttttacaatctactaaattaaagaacaaaacccca
ccaccagttgctcctaaacctcacatgcacccaggcactcctccatggtcaccacaacca
gaaactgcaaatcagcaatttcatcaagatgctgaaaataacactcctgtaactaccagg
gatcccgtccctgcaatggagtcttcagccatattagaggaagagccctccagagcacct
gcttctgatcaacaagaagcttctatcaaactcaactcacaggttcaagctgaagcagtc
gaaacatggggtctatctgagacacaaatacaatcaggtcagcaaatagattcttggcat
gagaatcaatcccagccacagttacatgcaaaaccagaaccagttgttagctcttgggct
ccacattcaacgcaggctactgaacagtcaccagtaactaactggggaccagctaatgtt
ccgtcacaagtccttgcccagaatcagtcacagatgcagccagcttgggtgacacaatct
caagtcctatcagaagtgcaaccatcatcatctgttcaaacacagtcacaggtccagccg
tcttggttgacacaaagtcaactccaacatcaaccccagtctcagtctcaaatgaataca
tgggtaacagctccatctcaatcaccacaccaacccccatgggcccaaagtcaaggtcca
ggacagctgtctgtgaattggtcccaagatcaagatcagccccaagtccagccatcctgg
gcccaacaacaacaacaagaatctcaaccaataccaccttggacagcctctcaacagcat
cctcagtcaccttggattcaacctccaagccaaccacagccacaaccacaaccagcttgg
gtctcgcaaaaccaacagcaaactctgccacaaccacctttaaatacatggaatcaatct
cagagtgtagttcaaacacagccttcatggactcatcaagctcaaccatcttctcagact
ccagcacaaatgcagcagccacagaacccttggacttcactaccaccacagccccaacca
caaccaacatgggcacagccacagcaaacaatgaattcatgggcaacagagcagaacaaa
acacagccatcttggaatcagacacaatctccagttcacacacaacctacatggtctcat
ccatctccacaacagacacttccacagtctcagtctcaaacagttttaagtacatggaca
ccacaaccccagcaaagtccactcgtgggttctaatgaaagtcataagctgtctcagcca
ttcaaatcttggagtccacctcagaccactcaaactcctcctccacatcaactgaactta
aatacacccagaacaaaggtaccttcacacatgccagcaggtaaaatgcctggaatgggt
tcagcttttgagatgccagccttgcgagggaaaggtgctgaactttttgccaagaggcaa
tccagaatggaaaagtatgtggtggattcttctacagtgcaagctaacaaggcaagatct
ttgtcaccttctccttctttaccagcctcatggaaatattcacctaactgtcgtgctcct
ccacctttggcatataatccactacagtcaccctcgtatccactaagcgctgtcaagcag
cctccctcttccagctctaatgcaaagagcaaaaataaagcaacagagaaagggaaacct
gcatccaaaccacttaatgttttggatgtcatgaagcatcaaccttaccaactaaattct
tctcttttcacctatgggccagcagcagaaaaacttgctgcagaaaaagaagcagctcaa
aagcttgctgctcaaaaagcagctgagatccaggctcaaaccgaatcccaagttcagcct
caagttcctgatccctatgcttttataccacaacaaccacagccaccacagcagccatat
gctatgcccatttcctctcctgctatgcatgatggcccatatcaccacaatcccaacaac
tatcagcccacacagaatgcttatcaacaagacccctatcagcaaatatacaatcaacca
catgcttaccaacaacctccttccaacacttaccagcatccaccaaatattccctaccag
cagcccccttcatatcaagctggtccatatccagcttcccaagcaccatgctatcaacca
actccatcttcttatgtagtgccaccttgtccagtaacagaaagagcagattcagctact
ggaagtagcgttcttgctgctccaaaaccaaagttctcagccaagaaaagtgatgcacag
gcacttggacgaagctcatccctatcaccaccagttagactgtcaccaatgggccttggt
tcaaggtctgcatctgtttccccttcacccacgccatcatctcacgcaacctacacttct
cgctcaacagagagacagatattctggcaggagaagggacgcaagcctccaaccccatgg
gaggcagcgtcacgccacccactgggcctagttgatgaagcctttgcccaccaggacatg
caccactccattgcttcgaatctgcgctcagcagccaatcgcagaatgctacctgaacct
ccagccgagtggaaggccaaggtggcatatgatcctccaccaaaaagccagggatggaga
atgagtcagtcgtctttctctttcctttccccaaccaaaagcacagcatctgcccctgct
tctcctgtaccatatggctcacatttgagacagtctcagccacctagatctatgactgag
gccagtcttggttcctctatgtctgggccacagaacagaagatctctgggacagtccata
tatagaagcacatacagtaacaccttgagatggtaa
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integrated database retrieval system
