Clarias gariepinus (North African catfish): 128518525
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Entry
128518525 CDS
T10780
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit b
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04141
Protein processing in endoplasmic reticulum
cgar04210
Apoptosis
cgar04217
Necroptosis
cgar04218
Cellular senescence
cgar04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128518525 (capn1b)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
128518525 (capn1b)
04217 Necroptosis
128518525 (capn1b)
04218 Cellular senescence
128518525 (capn1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128518525 (capn1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cgar01002
]
128518525 (capn1b)
Enzymes [BR:
cgar01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
128518525 (capn1b)
Peptidases and inhibitors [BR:
cgar01002
]
Cysteine peptidases
Family C2: calpain family
128518525 (capn1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
128518525
NCBI-ProteinID:
XP_053347654
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All DBs
Position
3:41749012..41782936
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AA seq
704 aa
AA seq
DB search
MFVFGGMSSRIHYERLRADGAGTNDRALPFLNQDYEALKQECLESGQFFEDPCFPARAPS
LGFKELAPNSSKTRGVVWKRPTELTSDPQFIVGGATRTDICQGALGDCWLLAAIASLTLN
DKLLHRVVPHGQSFTDDYAGIFHFQFWQFGDWVDIVIDDRLPVKDGELVFVHSAEGSEFW
SALLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELKSAPRDLPRIITKALERGSL
LGCSIDITSAFDMEAVTFKKLVKGHAYSVTGLREVDYRGSREKLIRIRNPWGQVEWTGAW
SDDSSEWNQVDPSDREDMNCKKEDGEFWMSFQEFKRQFSRLEICNLTPDALSDDSMSFWN
TIKFDGTWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPDDPEVACSFLVALMQKDRR
RYRRQGQDMHTIGFAIYEVPDEFRGCQSVHLKKEFFLRNSSCARSETFINLREVSTRLRL
PPGEYLIVPSTFEPGKEADFVLRVFTEKQSETEELDDEVTFMMDEEEEITEDDIDSSFRS
MFAKLAGDDMEISVHELRTILNRVVSKHQDIKTDGFGLESCRSMVALMDKDGSARLGILE
FQILWNKIRKWLGVFREFDLDKSGTMSSYEMRLALESAGFKLDNKLNQVLVARYADQELI
DFDNFICCLVKLEAMFRTFKQLDKEGSGVAELALPEWLYLTMCG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtgtttggcgggatgtcatcgagaattcattacgaacgcctgcgggcagatggc
gcgggcaccaacgatcgagctctgccctttctcaaccaggactacgaggcactgaaacag
gagtgtttggaaagtggacaatttttcgaggacccatgtttccctgcacgggcgccgtca
ctgggattcaaggaacttgcaccaaactcgtctaaaacacgtggagtggtgtggaagcgg
cccacagagctgacgtccgacccgcagttcatcgtcggaggagccaccaggaccgatatc
tgccaaggagctctgggtgactgctggctgttggcggcgatcgcatctctcactctcaat
gacaagctcttacacagagtggttcctcatggccagagcttcactgatgattacgccggg
attttccactttcagttctggcagttcggcgactgggtggacatcgtcatcgacgaccgt
ctgcctgtcaaggacggagagctcgttttcgtgcactcggcagaaggctcagaattctgg
agcgccctcctggagaaggcctatgctaagttaaacggctcgtacgaggctctgtccgga
ggctccaccactgagggcttcgaggacttcacaggcggcgtgtctgagatgtacgagctg
aagtcggcgcccagagacctgccccgcattatcacgaaggctctggaacggggatcgctg
ctcgggtgctcgattgatatcactagtgcctttgacatggaagcagtgacctttaagaag
ctagtgaaaggtcacgcctactccgtgacaggactccgagaggtggattaccgtggcagc
cgagaaaagctgatccgtatccgaaacccctgggggcaggtcgagtggactggggcgtgg
agtgacgattcttctgaatggaaccaggtcgatccgtctgatagagaggatatgaactgt
aaaaaagaagacggagaattctggatgtcgtttcaggagtttaagcgccagttttcacgc
ttggagatctgtaacctgacaccggatgcactaagtgatgacagtatgagtttctggaac
accatcaagttcgatggcacctggaggagagggagcacggctggaggctgcaggaatcat
cccaacacgttctggataaacccacagtacaagatcacgctgctggaggaggacgatgat
cccgatgatcccgaggtggcctgcagcttcctggtggcactgatgcagaaggaccggcgg
cgctaccgtaggcagggccaggacatgcacaccatcggcttcgccatttatgaggtccca
gacgagttccgcggttgccagagcgttcacttaaagaaggagtttttcctccgaaactca
tcctgcgctcgttccgagaccttcatcaacctgcgcgaggtgagcacgcgactccggctg
cctccgggcgagtacctcatcgtaccctcgacgttcgaacctgggaaagaggccgacttc
gtgctccgcgtgtttactgagaaacagtcagagaccgaagagctggatgatgaggtgacg
ttcatgatggatgaagaggaggagatcacggaggacgatatcgactcctcgttccgaagc
atgtttgccaagcttgctggcgatgatatggagatatcagtccatgaactgaggaccatc
ctgaacagagtagtgtccaagcaccaagatataaagacagacgggttcggtctggagtcc
tgtaggtccatggtggccctcatggataaagacggaagcgctcgtctgggaatcttggag
ttccaaatcctgtggaataagatcaggaagtggctgggagttttccgggaattcgacctg
gacaaatcaggaaccatgagctcgtatgagatgcgattggccttggagtctgccggtttt
aagctcgacaacaagctgaaccaggtgctggtggctcgctacgccgaccaagaactcatc
gactttgataacttcatctgttgtctggtcaaactagaggccatgtttagaacctttaag
cagttggacaaagaagggtccggggtcgccgagcttgccctcccagagtggctgtacctg
accatgtgcggctga
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