KEGG   Clarias gariepinus (North African catfish): 128518667
Entry
128518667         CDS       T10780                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128518667 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgar03041]
    128518667 (snrnp40)
Spliceosome [BR:cgar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    128518667 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    128518667 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SPT8 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Cytochrom_D1 WD40_like Beta-prop_Nup120_160 Beta-prop_IFT140_2nd WD_LRWD1 WDR54 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 128518667
NCBI-ProteinID: XP_053347864
LinkDB
Position
3:complement(23977014..23985301)
AA seq 347 aa
MIEAVKRGADMALVPADVKRPRTELVAAAQSQQLSAMGPPRTSSLQAPIMLLSGHEGEVY
CCKFHPNGSMLASAGYDRLILLWNMYGECENFATLKGHTGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSSEGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaagctgtgaagcgcggcgccgatatggcgctcgtccccgcggacgtgaagagg
ccgaggaccgagctggtggctgcggcgcaatcccaacaactctctgcaatgggtcctcca
cgcacctccagcttacaggctcctataatgttgttgtctgggcatgaaggagaagtctac
tgctgcaagttccaccctaacggttccatgctcgcttctgcaggatatgaccgcctcatc
ttgttatggaacatgtacggggaatgtgaaaactttgccacgctaaagggccacaccgga
gccgtcatggagcttcattacaacacagatggcagtctcctcttttcagccagtacagat
aagaccgtttgtgtgtgggacagcgagacgggcgagcgcgtgaagcgactcaagggccat
acctcttttgtcaattcctgttttccggctcgccgtggtccgcagctggcctgcaccggt
agtgatgacggaactgtgaagttgtgggacatcaggaaaaaggcgtcggttcataccttc
caaaacacgtaccaggttctaagtgtgaccttcaatgacaccagcgaccagatcatctca
ggaggcatcgataatgacattaaggtgtgggacctgagacagaataagctgatttacagc
atgcagggtcacggggactctgtgacgggactcagtctcagctctgaggggtcctactta
ctgtccaactccatggacaacagcgtacgcgtttgggatattcgtccatttgctcctaaa
gaaagatgtgtgaagattttccagggaaatgtccacaattttgaaaagaatcttctgcgc
tgctcttggtcaccagatggcagtaagatagcagcaggctccgctgacaggttcgtgtat
atctgggacacgacctctcgtagaatcctttataagcttcctggacatgcaggatcagtc
aacgaggtggccttccatcctgaggagcccattgttctatctggatccagtgataagcgc
ctctacatgggggaaattcagtag

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