Clarias gariepinus (North African catfish): 128518809
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Entry
128518809 CDS
T10780
Symbol
nup153
Name
(RefSeq) nuclear pore complex protein Nup153 isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128518809 (nup153)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128518809 (nup153)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128518809 (nup153)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128518809 (nup153)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Mucin-like
Nup_retrotrp_bd
Motif
Other DBs
NCBI-GeneID:
128518809
NCBI-ProteinID:
XP_053348083
LinkDB
All DBs
Position
3
Genome browser
AA seq
1545 aa
AA seq
DB search
MAATGGGKIRTRRYHVVSKPYAKAKQQPGLISRVTDTVKSIVPSWLQKYFKNGELAEEEE
TPVQVEQNDVTAPPNGSQESAPLPNARDSPEPSTSNAEPSTSKASLNFQDVLSRPPLNRS
HLHFPSHDGSPALSGSLFSQPSTSTAPPFPPSPFAVSSSFIPLVKEIKDSSSQHEDDNIS
TTSGFSSRASDKDVPTSKTAPLLWSPETERTQSASQLAHSSLKKPAFNLSVFGTSSSSAM
NSSVLNSSQLGDSPFYPGKTTYGGAAAAKAARSRPGTPYHAPVRRQIKAKPAGAQPCGVT
SATARRILQSLERMSSPLADAKRIPSTVSSPLSTSLNHSALDGSGNFQSKRKKLEPAVPP
VQKLVIPAVAAVSGNRSMSFRPSLTPGSVSRVLEKISKETPVRRSPQVPDAVPAATASIS
GLSYPLSSTPAASVTSTGGGKMKRERSVRPSTKRPDDEVVEVPNLPAVSLPISNFNLPTF
TFSSPPPASTLTPSTTPRVSEKAAISKETNKESTPVSVSFTFSSPIVKATAASPPSFSSS
PGFTFSAPTMKTGISMSNGKLPPAKVKTAGESSEEFQGPFKPAKTLKRGSVLDVLKEPGF
SSSSQKSSATQEARNSNTTAQLFSTSLPNFGEKFKPAAGSWNCGTCMVQNKPSDKKCVAC
QAPQPSTDFSSKLDSGPAKAPAASLSSLFAPPAGSWECDTCLVQNKPEVVKCVACETAKP
GTGVKPALSRPPVSEVSSTLPASSTPAITSTFSSSSTTTTTAGTTSGLLSFADKFKKPEG
MWNCDVCMVDNKAQDVKCVACQNAKPGAAAALPSQAPLSQASASTPASTAPLLGFGDKFK
KPEGSWDCDVCCVQNKAADQKCVACETPKPGAKVETKGFAKQSFSMNSTSTSFKFGAPPT
TSNSASSELKFGGSFSNPTSSSSFKFGNASSDSTSTSSGFKFGSSSSESSSGAFKFGGAS
TEQSSTGSASTDSFKFGGSSNGFKFGADSTSGSTGEEKKSEPQNPGAGFKFGGSTTSGFG
STSTAATTASQGFSFGLSKPSEEKTGSNLSFSFSAPKASEVEKENPLPSREAVLDTSNTV
CLFSDSLAPEADQTTGQLFGEETPQKTSTAAFMFGKPEEKKDTSTISTGFIFSTTKEAAN
PAPTTVGFNFNKPDPTKEVPKPTFTFGKPTEPAETQKPVFGFGQNATDTAAPKPAFAFIG
GSSTAPAPAPAPAPASSSLFGTPSSSSLAPTPAPSSTFVFGQGSSSETPSKTFLFGQQQQ
ETQPASTEASAAPNQSQPFVFGSMNSSTTSPFAFGAASSAPASSFGPAASAPASSFGAAA
SAPASSFGAAASAPASSFGAAASAPASSFGAAASAPSSSFGAAASAPASTAPAPSPFGFT
ATTSASGFGPGPTLAFGSSQSAVPVFGSAASSFTATPSAAAPAFGVKPNTQSVFGQQANS
TPGFGSSTAPSGQGSFQFGGNNAFGATGGSSNSSVFTFGAGAAGATGSPAGAPAMSAQPA
APGGGFGFSPSAAFNIGSAKNANAPTNRQHAIAGRKIKTAVRRRK
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacaggaggagggaaaatcagaacaagacgatatcacgtcgtttctaaacct
tacgccaaggccaaacagcagcctggtctgataagccgagtaacagacaccgtgaagagt
atagtcccctcttggctacagaagtatttcaaaaacggcgagttagccgaagaagaagag
acaccggtccaggtggagcagaacgacgtcacggctcctcccaacggcagtcaggaatcc
gctccgctccccaacgcacgcgactcccccgaacccagcaccagtaacgcggaaccctca
acaagcaaagcttcgttgaatttccaggacgttctctccagacctccacttaaccgctcg
cacctgcatttcccttcccacgacggctcccctgcgctcagtggatctctcttttcccag
ccctccacatccaccgctcccccttttccaccgagccccttcgctgtgagctcgagcttc
atccccctcgtgaaggagatcaaggactcgagctctcagcacgaggacgacaacatctcc
accacgagcggcttttcatcgcgggcgtctgataaagatgttcccacctcaaagactgca
cccctcctctggtccccagagacagaacgcacacagtccgcgtcgcagctggctcacagc
agcctcaagaagccggcgtttaacctgtcggtctttggcacatcctcatcatcagcgatg
aacagttcagtgttgaactccagtcagttgggggattctcccttctatccaggaaagacg
acgtatggaggcgctgcagcagccaaggcggctcgatcacggccgggcactccttatcac
gctccggtgaggagacagatcaaggccaaaccggcaggagctcagccctgtggagtgacc
agcgccactgccaggcgcatcctgcagtcactggagcgcatgtccagccctctcgctgac
gcgaaaagaattccatcaacagtttcttctccgttatcaacctcgttgaatcactcggct
ctagatggaagcggtaattttcagtctaagaggaagaagctggaaccagccgtcccgcct
gtgcagaagctggtgattccagctgttgcagctgtgtctgggaaccgctccatgtctttc
cgcccttccctcactcctggatctgtaagcagagtgttagaaaagatcagcaaggagacg
cctgtgagacggtcccctcaggtcccagacgccgttccagctgctacggcaagcataagc
ggcctgtcgtacccgttgtccagcacaccagctgccagtgtcacgagtactggcgggggc
aagatgaagagagaaaggagcgtccgaccttccaccaaaagaccggacgatgaggttgtc
gaagtgccgaatctgcccgctgtctctctgccgatcagtaacttcaacctgcctactttc
actttctcttccccgccccctgcctcgacgcttacacccagcaccacgcctcgagtctct
gagaaggcagccatcagtaaggaaaccaacaaagaatccacacctgtttctgtctctttt
accttttcttcacctattgtcaaggcgacagctgccagtccaccatccttttcctcatca
ccgggatttacctttagcgcgccgactatgaaaaccggaatttccatgtcaaatggtaaa
cttcctccagcgaaagtaaaaacagccggtgaaagtagtgaggagtttcaagggcctttc
aaaccagccaagaccttgaagcggggtagtgttctagatgtccttaaagaacctggattt
tcttcctcgtcccagaaatcctccgcaacacaagaggcgaggaatagcaacacaaccgca
caattgttttcgacttctctccccaactttggtgagaaatttaaacctgcagcaggatca
tggaactgtggtacctgcatggtgcaaaacaagccctcagacaaaaagtgcgtggcctgc
caggccccgcagcccagcacagacttttcatccaaattggacagtggacccgcaaaagcc
cccgctgctagtcttagttctttgtttgcgccaccagccggaagctgggaatgtgacacc
tgtctggtgcagaacaagcctgaggtggttaaatgtgtagcgtgcgaaacggccaagccg
gggaccggagtaaaaccggccctgagtcgacctcctgtctctgaggtttcctcaaccctg
cctgcttcttctacaccggccatcacttccaccttcagcagcagcagcactaccacaacc
accgccggcacaacatctggactgcttagttttgctgacaaatttaagaagccggagggg
atgtggaattgtgacgtatgcatggtggacaacaaagcacaagatgttaagtgtgtagca
tgtcagaacgctaaaccaggagcagctgcggcactgccatctcaagcaccattatcccag
gcttctgcctccacaccagcaagtacagcacctctgttaggatttggagacaagttcaag
aaaccagagggaagttgggattgtgacgtctgctgtgttcagaacaaggctgcggaccag
aagtgtgtggcgtgtgaaacacccaaaccaggagctaaagtagaaaccaaaggttttgcc
aagcaatccttcagcatgaattcaacctcaacttcttttaaatttggtgctccaccaaca
acttcaaattcggcctccagtgaattgaaattcggcggctctttctccaaccccacctca
tcgtcgtcctttaaattcggtaacgcttcatcagactccacctccacttcttcaggcttc
aaatttggaagttcgtcctcagaaagttcttcaggagcgttcaagtttggtggagcttcc
acagaacagagctcgacaggctcggcttcaacggattctttcaaatttggcggttcctca
aacggctttaagttcggagcggattccacatccggatcgacaggcgaagagaaaaagagc
gaacctcaaaatcccggtgcgggttttaagttcggaggaagcactacgagcggtttcggc
tccacgagtactgcggccacaactgcgtcacagggcttttccttcgggctgtctaaacca
tctgaagagaaaactgggtcgaatctgtcattcagtttctcggcacctaaagcctccgaa
gtggaaaaggagaaccctcttccttccagagaagccgttttagacacttccaacacggtt
tgtctcttcagcgactctttagcgccagaggctgatcaaaccacgggccagttgtttggc
gaggaaaccccacaaaagacttcaaccgctgctttcatgttcggtaaaccagaggagaaa
aaggatacctcaacaatctcgaccgggttcatattcagtacgaccaaggaggctgccaat
cccgcacccactactgtgggctttaattttaacaaaccagaccctacaaaggaagtcccc
aaacctacatttacgtttgggaaacccaccgagccggcagaaacccaaaagcctgtgttt
ggcttcggacagaatgcaacagacactgcagcccccaagcctgcgtttgccttcattgga
ggttcatccactgctcctgctcctgccccagccccagcccctgcttcctctagcctcttc
gggactcccagcagttcaagcctggctcccacccctgctcctagtagcaccttcgttttt
ggtcaaggctcctcttctgaaacaccttccaagactttcttgttcggtcagcagcagcaa
gaaacccagccagcctcgacagaagcctctgccgctccaaatcagtcacagccattcgtc
ttcggctccatgaacagctcgaccacgtcgccgtttgcttttggcgctgcatcctccgcg
ccggcgtcttcttttggccctgcagcctccgcgccggcgtcttctttcggcgctgcagcc
tccgcgccggcgtcttctttcggcgctgcagcctccgcgccggcgtcttctttcggcgct
gcagcctccgcgccggcgtcttctttcggcgctgcagcctccgcgccatcgtcttctttc
ggcgctgcagcctccgcgccggcgtctacagcccctgcaccctctccgtttgggtttacc
gccactacgtccgcctctggcttcggcccgggaccgacactggcgttcggctcatcgcag
tctgcagttccagtctttggatcggctgcatcctctttcacagccacaccatcggcggca
gctcctgccttcggagtgaagcctaatactcagtcggtttttggccaacaggccaactcg
acacctggctttggatcttctactgccccttctggtcaaggatctttccagtttggagga
aacaatgcattcggagcaaccggtggtagcagcaacagcagtgtatttacctttggagca
ggtgctgctggtgctacgggaagtcccgcaggagcaccagctatgtccgctcagccggca
gctcctggaggaggcttcggcttctcaccgtctgcagcattcaatattgggtcagcaaag
aatgctaacgccccaacgaacagacagcacgccatcgccggacgcaagatcaaaaccgcc
gtccggcgcaggaagtaa
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