Clarias gariepinus (North African catfish): 128518937
Help
Entry
128518937 CDS
T10780
Symbol
acana
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Proteoglycans [BR:
cgar00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
128518937 (acana)
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
128518937 (acana)
Lectins [BR:
cgar04091
]
C-Type lectins
Lecticans
128518937 (acana)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128518937
NCBI-ProteinID:
XP_053348353
LinkDB
All DBs
Position
3:10713136..10728496
Genome browser
AA seq
1580 aa
AA seq
DB search
MTSLLLLCLCLRVISAKWLFTDYLYTEPERTLSVSIPIAEPLQALMGDTLVLPCYFQDDT
VPDPGAPTIAPLSHRIKWSIITKNETIDILVAAEGIVALNKKYTDRVQMVAYPTSPNDGS
IKITQLLSNESGVYRCEVVHGIEDSHDTVNVQVQGIVFHYRAITSRYTLTFEKAQAACIE
NSAVIATPEQLQAAYDTGYHQCDAGWLSDQTVRYPIHDPREACYGDKYEFPGVRTYGVRE
IDETYDVYCFAEKMSGRVFYSTCPGKCTFGEAKTKCAKLGAKLATTGQLYLAWQAGMDEC
NAGWLADGSVRYPINIARPQCGGGLLGVRTVYRFINQTGYPLPESRYDAICYTDEVEEGS
AIFNIIPESTTDVLSVGMVTDGPPEFIMETSTKSEAIGEVETHKPPTTTADFLYVEQNIT
QLPLLSPPSTIGDIVEVVTAQPDLGLAKTPGFSDENATEPVMSLTGVVFHYRLGHSRYAF
TFVEAQLACQNIGAVIANPQQLQAAYEAGYHQCDAGWLIDQTVRYPIVSPREKCAGDMED
MPGVRSYGVRPASENYDVYCYMDKPRGNVFHVSSLEGFTYHEAMASCHAQNASLASTADL
YMAWKQGFDKCRAGWLIDHSVRYPINNPRPQCGGGKSGVHTVFKFPNQTEYPDMHSKFDA
YCLKVDLELYIYDTESNMTWIEEELVNLTLITGLLVNHTIVSPIPVDLSGSGSADLPSGT
SGSSGDVSASGSGEQPTGASYKEGEPSGSGLASGSSGLGGELSGFGLTSGSSGLGQELSA
SGSPSGSSGLEGELSGSGLPSGSSGLAGELSGSGLPSGSLDLGGELSGSGLPSGSSGLAG
ELSGSGLPSGSSDLGGELSGAGLPSGFSGLGGELLGSGLPSGSSGIGGELSGSGLPSGSS
GIGGELSGSGLHENLSGSGLSGDGSGISVTFSGINTIFSGGTSASGAPQEAGEGSAEILT
FMSGFDSGFFSGDGSGSGSGSSFGSAESGSLADQFGILGDSGSGEPSGIISGLGSSGEVS
GVSCFSSSSSGDDSGFSGLSGSGLIMEGQEVELSTASLLKSQELGGSEVLFSGSRALEGS
GLSGSGVGDSGDLSGSGSGSGISAITFLDSSLTNLIDLSSREQEASGILMYGSGEGSGDF
SGGSGLPSGDTTEASTSGDIVSFPDESLMEVLFTSTQNQELRKGPIEHSGKESVTFLSSG
HQDTTILSEDHHPTSLPSEVPVQSTDETSVIAPSGLLSNSAWPQEILSSIATTFWKYDTV
TPTMADTTTEPAFSVNTPTVIEAPAMEQASVDPCNPNPCGGAAVCSVQEGVGVCHCPPGV
KEEECHIEVDVCHSNPCANGATCVEVQDAFKCLCLPSYGGDRCEIDIETCEEGWTKFQGN
CYLHFPDRTVWEEAEQHCRSLGAHLVSITNPEEQVFVNSNAQDYQWIGLNDKTFENDFQW
TDGTPMQYENWRPNQPDNYFNSGEDCVVMIWHENGQWNDVPCNYHLPFTCKTGPVTCGQP
PELKNAKWFGAKKERYQVNSIIRYQCNDGFRQRHPPVVRCMSDGHWQKPQVECIPQGKRR
LQKRSTRRRPAKRTSLRKHL
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcattgttgttactgtgtttgtgtcttcgggtaatctcagcgaaatggctcttt
acagattacttatatacggagccagaaagaaccctgagtgttagcattcccattgcggaa
cctctccaagctttaatgggagatacattggttctgccttgctatttccaagatgacaca
gtacctgacccaggtgctcccaccatagcgcctttgtcccatcgcatcaaatggagcatt
atcaccaaaaatgagaccatagacatattggtagccgccgagggtatcgtggctctgaat
aaaaagtacacggatagggttcaaatggtggcataccccaccagcccaaatgatggcagc
attaaaatcacgcaacttctttcaaacgagtctggagtgtaccgctgtgaagttgtgcat
ggaatcgaagacagccatgatactgtgaatgtccaggttcaaggcattgtattccactac
cgtgccattacttcccgttacaccctgacgtttgagaaggcacaggcagcctgtattgaa
aatagtgctgtgattgccacaccagagcagctacaggcagcatacgatacagggtaccac
cagtgtgatgctggctggctttctgaccaaactgttaggtatcctatccacgatccccga
gaagcctgctatggtgacaagtatgaattccccggagtgagaacgtacggagtaagagaa
attgacgagacatatgatgtgtattgctttgctgagaagatgtcagggagggtgttctat
tccacatgccctggaaagtgcacttttggtgaagcaaagaccaagtgtgctaagctgggt
gctaaattagccacaactggccagctctacctggcctggcaggctggtatggatgaatgt
aatgcaggctggctggcagacggaagtgtccgctatcctatcaacattgccagaccacag
tgtggaggaggtctgctgggagtgcgcactgtgtaccgcttcatcaatcagacaggctac
ccgctaccagaatcaagatatgatgctatctgttacacagatgaggtggaagagggctca
gccatattcaacatcatcccagagtccacaactgatgtattaagtgtgggcatggtgaca
gacggcccaccagagtttattatggagacctctaccaagagtgaggcgattggcgaagtt
gaaactcacaaaccccccaccactactgctgactttctctatgtagagcagaatatcaca
cagctgcctctgttatcgccacccagtaccattggcgacattgtagaagtggtgactgca
cagcctgaccttggattagccaagacacctggattttctgatgaaaatgcaacagaacct
gtgatgtcccttactggtgttgtctttcactacagactaggccacagtcgctatgctttt
acctttgttgaggctcagctagcctgtcagaacataggtgcagtgattgccaatcctcaa
cagttacaggctgcctatgaagctgggtatcaccaatgtgatgcaggctggctgatagac
cagactgtgaggtaccctattgtatccccacgagagaaatgtgctggtgatatggaagat
atgcccggtgtgaggtcttatggtgtacgacctgccagtgagaactatgacgtgtattgc
tacatggacaaaccaagagggaatgtttttcatgtgagctcacttgagggttttacatat
catgaagcaatggcctcttgccatgcccagaatgcctctttggcctccacagctgatctg
tatatggcctggaagcaaggatttgataagtgccgtgctggctggctcattgaccacagt
gttcgttatcctattaataatcccaggcctcaatgtggaggagggaaatcaggagtccac
acagtctttaagtttcccaaccaaactgaatatcctgatatgcactccaaatttgatgcc
tactgcttgaaagttgatctcgaattatacatttatgatactgagtcgaacatgacatgg
attgaagaagagctggtaaacctgaccttgataactggccttcttgtgaatcataccatt
gtttctcctattcctgtggacctctctggatctggttcagcagacctgccatctgggacc
agtggttcttctggtgatgtgtcagctagtggaagtggggagcagcctacaggggcatca
tacaaagaaggagaaccttcagggtctggactggctagtgggtcttcaggtttaggagga
gaactttcaggatttggacttactagtgggtcatcaggtttaggacaggaactgtcagca
tctggatcgccaagcggttcttcaggtttagaaggagaactttcaggatctggactgcca
agtgggtcttcaggtttagcaggagaactttcaggatctggactgccaagtgggtcttta
gacttaggaggagaactttcaggatctggactgccaagtgggtcttcaggtttagcagga
gaactttcaggatctggactgccaagtgggtcttcagacttaggaggagaactttcagga
gctggactgccaagtgggttttcaggtttaggcggagaacttttaggatctggactgcca
agtgggtcatcaggtattggaggagaactttcaggatctggactgccaagtggatcttca
ggtattggaggggaactttctggatctgggctacatgaaaacttgtctggctcaggcctt
agtggtgatggctcaggcataagtgtgactttctcaggaattaacacaatattttctggg
ggcacttcagcttcaggggcacctcaggaagctggggagggcagtgcggagatcctcact
ttcatgtcaggttttgattcgggattcttcagtggggatgggtctggatcaggaagtggc
tcaagttttggttcagcagagagtgggtctttggcagaccaattcggtatcttaggagat
agtggaagtggagaaccttctggcattatttcaggccttggttctagtggtgaggtctct
ggagtcagttgtttttcatcatcttcctctggagatgacagtggtttctcagggcttagt
ggcagtggtttaatcatggaaggtcaagaagttgaactgtctactgcttcactcctaaaa
tcacaggagttaggtggaagtgaggtgcttttcagtggatctagagctctagaagggtct
ggtttgagtggttctggtgtgggtgacagtggtgatttaagtggctccggtagtggttca
ggaatttctgccatcacctttttggactcaagccttactaatctcatagacctatccagc
agagaacaagaggcatctgggattttgatgtatggctcaggagaagggagtggtgacttc
tctggaggctctggtctcccatcaggagacacaacagaggcatcaaccagtggggatatt
gtatcatttcctgatgagagtttgatggaagttttgtttacatccactcaaaaccaggag
cttagaaaaggaccaatagagcacagtgggaaagagagtgtaacatttttgagcagtggg
catcaggatacgactattttaagtgaagaccaccatcccacatccctccctagtgaagtc
ccagttcaatcaactgatgagacatcagttatagctccctcagggttgcttagtaacagt
gcatggccacaggaaattttgtcatctattgcgacaaccttctggaaatatgatactgtg
accccaactatggctgacaccactaccgagcctgccttttcagtgaacaccccaactgtc
atagaggctccagccatggagcaagcatctgtggacccatgtaatccaaacccctgtggt
ggtgctgctgtgtgttctgtgcaagaaggggttggtgtgtgtcactgcccacctggggtg
aaggaggaagagtgtcatatcgaggttgatgtgtgccattcaaacccttgtgccaatgga
gctacgtgtgtggaggtacaggatgctttcaaatgcttatgcctgcccagctatggaggg
gatcgctgtgagatcgacattgaaacatgtgaggaaggctggactaagtttcagggcaac
tgttacctgcatttcccggacagaacagtgtgggaggaggctgaacaacactgtcggagc
cttggagctcacctggtcagcatcaccaatccggaggagcaagtatttgttaactccaat
gcacaggattaccagtggattggactaaatgataagacttttgagaatgacttccagtgg
acagatggcactccaatgcaatatgagaactggagacctaatcagccagataactatttt
aactctggcgaggattgtgtggtgatgatctggcacgaaaatgggcagtggaatgatgtg
ccctgcaactatcatttaccatttacatgcaaaactggcccagttacatgcggtcagcca
cctgaactgaagaatgccaagtggtttggggctaagaaggaacgctatcaggtcaactca
ataatcagatatcagtgcaatgatggcttcagacagcggcatccacctgtggtccgctgt
atgtctgatggacactggcagaagccacaggtggaatgcataccccagggtaaaagaaga
ctacagaagagatccactaggcgtcgacctgctaagaggacatcattgaggaagcacctc
taa
DBGET
integrated database retrieval system
