Clarias gariepinus (North African catfish): 128518991
Help
Entry
128518991 CDS
T10780
Symbol
trpm5
Name
(RefSeq) transient receptor potential cation channel subfamily M member 5
KO
K04980
transient receptor potential cation channel subfamily M member 5
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128518991 (trpm5)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128518991 (trpm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
128518991
NCBI-ProteinID:
XP_053348446
LinkDB
All DBs
Position
3:10669876..10688062
Genome browser
AA seq
1192 aa
AA seq
DB search
MSEFQDTPMVLIPSGKKCTNCGEPVLEPDEEGNVLGCQCYPEDEETNEKSSQKAKEKRNK
SHWAAGCLGDIDFTGSNKSRGKFVRVNSTTEPELIYQLLTEQWGLAPPHLVVGLVGGDEQ
AQMKPWLRDTVRKGLVKAAQSTGAWILTTGLQFGITKHLGQAVRDHSLASTSSKVRVVAI
GITPWTKINKREQLLSTKPDRPVSYSSEDLPHGDVYSLDSNHSHFILVEEDPKKPGATND
MRVKMLKHISLQRTGHGGPGSFEIPVLCLLLHGEPRILQRMYKTIQNSTPWLILAGSGGV
ADILVTLINQACWDTEIVQDLLMETFPSCKSASITSWVKLILKILENLHLLMVHDPEQET
TDLDTVILKALVKANKSQSQEAQDFLDELKLAVAWNRVDIAKSEIFNGDVEWTAEDLEEV
MMDALVTDKPDFVRLFVDNGVNLAEFMTYSRLQELYCSVREKSLLYELLLKKHEKQAKLS
GRSAGPAHVDVGDRRPRFTLLEVSKVLKDFLHDSCRGFYQKPLVERGGRLFHNQKDLIDL
EQHCEHPLRDLFLWAVLQNRQTMANYFWALGPEAVAAALAGCKILKEMAHLESEAENARS
MKEAKYEQFSLDLFSECYSNSEDRAYALLVRKTSCWNQTTVLNLATEADAKSFFAHDGVQ
ALLTKIWWGAMTTDTAISKLVVSFFFPPLIWTNLIKFSDQELENRVGGEQFAELDSFDTE
KALLLTDENPADVEAAGDSAVQSCGATWSQFILRRWKRFWSAPVTVFLGNVIMYFAFLVL
FTYVLLLDFRPPPPNGPSPAEIILYFWVFTLVLEELRQSFFSDEDMSILKKFKLYVEDNW
NKCDMVAISLFVIGVSCRMSEGTYEAGRTVLALDFMVYTLRLIHIFAIHKQLGPKIIIVE
RMMKDVFFFLFFLSVWLIAYGVATQALLHPNDPRLDWVFRRVLYRPYLHIFGQIPLEEID
AAKMAHDNCTMDLHLIIDGTLPPCPNIYANWLVILLLVIYLLVTNVLLLNLLIAMFSYTF
QLVQGNADIFWKFQRYNLIVEYHSRPALAPPFIIISHITELFLSLFGKAEENIEILEREL
PPGLDQKLMTWESVQKENYLAKLEKRHLESSEERLKSTSSKVQSLLMSAARFKEQEKRLV
FMEAEVKYCGEVLSWMGECFKRSTLKCDRDVPKSPRTKASSKGAANSSKKDE
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtttcaggacactccaatggtattgataccctctgggaagaagtgtacaaat
tgtggtgaaccagtacttgaaccagatgaagaaggaaatgtgttaggttgtcagtgttac
cctgaagatgaagaaaccaatgaaaaatcgagtcaaaaagctaaagagaagcggaataaa
tctcactgggcggctggttgtttgggggacattgactttactgggtccaacaagtccaga
ggcaagttcgtcagggttaacagtaccacagagcctgagctaatctaccagttgctgaca
gaacagtggggtcttgctcctccacatctggtggtggggcttgtgggtggagatgaacag
gcccagatgaaaccctggctcagagacacagtgaggaaaggattagtgaaagctgcacag
agcacaggagcatggatcctcaccaccggtctgcagtttggcatcacaaagcatctgggc
caggcagtgagggatcactctctggccagcacttcttcaaaggtccgtgtggtagccatc
ggaattactccctggaccaagatcaacaaacgagaacagctgctctctactaagcctgat
cggccagtgtcctactcctcagaggatcttccccatggagatgtgtactctctggactcc
aaccactcacatttcattttagttgaagaagacccgaagaagcctggtgctaccaatgac
atgcgtgtcaaaatgctaaaacacatctctttacagcgtactggacatggagggcctggc
agctttgaaattccagtcttatgtctgcttcttcacggagagccaaggatattgcagagg
atgtacaagacaatccaaaattcaactccatggctaattctggctggctcagggggtgta
gcagacattttggttacactgattaaccaagcctgttgggatactgagattgtccaagat
cttctaatggagacatttcctagttgcaaaagtgcttcaatcacttcctgggtcaaattg
attctgaaaattttggaaaatctccatctcttgatggtgcatgacccagagcaggagacc
actgatctagacaccgtcatcctcaaagcattagttaaagccaataaaagtcaaagtcag
gaggcacaggacttcctggatgagctgaaactggctgtggcctggaacagagtagacatt
gcaaaaagcgagattttcaatggagatgtagaatggactgcagaagatcttgaggaggtc
atgatggatgctttagtcactgacaagccagattttgttcggctgtttgtggacaatgga
gtaaacctggctgagtttatgacgtacagtcgtctccaggagctctactgctctgtgcgt
gagaaaagcctcctgtatgaactactcctaaagaaacatgagaaacaggcaaagctctca
gggcgatcagctggacctgctcacgttgatgtaggggatagacgacctcgcttcactctc
cttgaagtctccaaggtcctgaaagattttctgcatgactcctgcaggggcttttaccag
aaacctctagtggaaagagggggcagactttttcacaaccaaaaagacctaatcgacttg
gagcagcattgtgagcatcccttgagggatctctttctttgggctgtcctgcagaacaga
caaacaatggccaactacttctgggccttgggtccagaagcggtggctgcagcccttgct
ggatgtaaaatcctgaaggagatggctcatttggagtcagaggctgaaaatgctcggagc
atgaaggaagccaaatatgagcagtttagtttagatttattcagtgagtgctactctaac
agtgaggatcgagcatatgctctgctggtgagaaagaccagctgctggaatcaaaccact
gtgctgaacctggccacagaggccgacgcaaagtccttttttgcccatgatggagttcag
gcactgctgactaaaatctggtggggagccatgacaacagataccgccatctctaaactg
gttgtgtcttttttctttccacctctaatatggaccaatctgattaaattcagtgatcag
gaactggagaatcgagttggaggagagcagtttgcagagctagacagttttgacacagag
aaagccctgctactgactgatgagaacccagccgatgtcgaggcagctggtgattctgca
gttcagagctgcggtgcgacgtggagtcagttcatcctaagacgttggaagcgcttctgg
agtgcccccgtcacagtgttcctaggcaacgtcatcatgtacttcgcttttttagtgctc
ttcacctacgtattgctactggacttccggcctccacctccaaatggcccttctccggct
gagatcattctctacttctgggtctttacactagtactggaggagctcagacagagtttt
ttctcagatgaagatatgagtatattaaagaagtttaagctctatgtggaggataactgg
aacaaatgtgacatggtagccatctctctgttcgtgattggggtgtcatgcaggatgtca
gaaggaacatatgaggctggacgcactgtcctggcattggacttcatggtttatacttta
aggcttatccacatttttgccatccacaagcagcttggaccaaaaatcatcattgtggaa
agaatgatgaaggatgtcttcttctttctgtttttcctgagcgtgtggttgattgcatat
ggagtagcaactcaggctctgctccacccaaatgacccccgacttgactgggttttccgc
agagtgctctaccgaccttacctccacatattcggccaaattcccttggaggagattgat
gctgctaagatggcccacgataactgtacaatggatctacacctgatcatcgatggcact
ctgcccccctgcccaaacatctatgctaactggctggtcatcctcctgctggttatttat
ttactggtcactaatgttcttctgctcaatctccttattgcaatgttcagctacacgttc
cagcttgtgcaggggaacgctgatatcttctggaaatttcagcgatataatctgattgtg
gagtaccacagccgacctgctcttgctccaccttttattatcataagccacattactgaa
ctctttctgtctttgtttggaaaggcagaggaaaacattgagatcttggagagagagctg
ccaccagggttggatcagaagttgatgacctgggagtctgtacaaaaggagaattatttg
gccaaacttgaaaaacgtcacctggaaagtagtgaggagagactcaagagcacatcttca
aaggtgcaaagcctgctgatgagtgcagcacgatttaaagagcaagaaaaacgtttggta
tttatggaggctgaggtgaaatactgtggagaagtactatcctggatgggagaatgcttc
aagaggagtacactaaagtgtgacagagatgttcccaaaagcccacgcaccaaggctagc
agtaaaggggcagcaaattcatcaaagaaagatgaatag
DBGET
integrated database retrieval system
