Clarias gariepinus (North African catfish): 128519014
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Entry
128519014 CDS
T10780
Symbol
smc3
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04110
Cell cycle
cgar04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
128519014 (smc3)
04114 Oocyte meiosis
128519014 (smc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128519014 (smc3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgar00535
]
128519014 (smc3)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
128519014 (smc3)
Meiosis-specific proteins
Cohesin complex and associated proteins
128519014 (smc3)
Proteoglycans [BR:
cgar00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128519014 (smc3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_23
OmpH
AAA_29
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
128519014
NCBI-ProteinID:
XP_053348476
LinkDB
All DBs
Position
3:43505714..43528973
Genome browser
AA seq
1217 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTVVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEDEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSSKRETCGDKSRQLRDAQQDARDKVEETERVVRELKARISAMKEEKEQLSSERQEQIK
QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELQETEPKFNTVKEKEER
GIARLAQATQERTDLYAKQGRGSQFTSKEDRDKWIKKELKSLDQAINDKKRQIAAINKDL
EDTEANKEKNLEQYNKLDQDLNEVKTRVEELDKKYYEVKNRKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVINGYHGIVMNNF
ECEPAFYTCVEVTAGTRLFYHIVETDEVSTKILMEFNKMNLPGEVTFLPLSKLDVRDTAY
PETNDAIPMISKLRYSPNFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDMRKAEEELSELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQRRVDDLNDEIRQLQQDNRQLLNERIKLEGIMTRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELDGINKRVKDTMARSEDLDTLIDKTEVEIKDHIKS
MERWKNIEKEQNEAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
TLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQDELDRGYKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDAEGGQSQDEGEGGADSERG
SASQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMIVELAGHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
ISAEQAKDFVEDDTTHG
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtacattaaacaggtgatcatccagggcttccgcagttacagagaccagactgtggtc
gaccctttcagctctaagcacaacgtaatcgtgggcagaaacggatctgggaagagtaac
ttcttttacgctatccagtttgtgctgagcgatgagttcagtcacctgcgtcccgaacag
cgtctggccctcctgcacgagggtacgggtccccgagtcatctccgcttttgtggaaatt
attttcgacaactctgacaacagacttccgattgataaagaggaggtttccctgcgtcgc
gtcatcggagccaaaaaggaccagtacttcctcgataagaagatggtgacgaagaacgat
gtgatgaacttgttagagagcgcaggattctcccgcagtaacccttactacatcgtaaag
caggggaagatcaaccagatggcgacggctcctgactctcagcgtctgaagctcctgagg
gaggtggcggggacccgggtgtacgacgagcgaaaggaggagagtatctcgctgatgaag
gagacggaggggaaaagggagaagatcaacgagctgttgaagtacatagaggagcgcctg
cacacgctggaggacgagaaggaagagctggcacagtatcagaagtgggacaagatgagg
agagcgctggagtacaccatctacaaccaggagctcaacgagactcgggccaagctggac
gagttgtccagtaagagagagacgtgcggggacaaatccaggcagctacgtgacgcccaa
caggacgcccgagacaaagtggaggagactgagcgagtcgtgcgcgagctgaaggctcgt
atctctgcgatgaaggaggagaaggagcagctgagctccgagcggcaggagcagatcaag
cagagaaccaaactggagcttaaagccaaagacctgcaggacgagctggcaggaaacagc
gagcagaggaaacggttgctgaaagagaggcaaaagctgttggagaagattgaggagaag
cagaaggagctgcaggagaccgagcccaaattcaacacggtgaaggaaaaagaggagaga
ggcattgcaagactcgcccaggccactcaggagcgcacggacctgtacgccaagcagggc
agaggcagccagttcacctccaaagaggacagggacaagtggatcaaaaaggagctaaag
tccctcgaccaggccattaatgacaagaaacgacagatcgctgccatcaacaaggacctg
gaggacacagaggccaacaaggagaagaacctggagcagtacaataaactggaccaagac
ttgaacgaagtgaagacccgcgtggaggagctggataagaaatattacgaggtgaagaac
aggaaggacgagctgcagagcgagagaaactacctgtggagagaggagaatgcagagcag
caggccctggcagctaagagagaagacctggagaagaaacagcagctgctgcgtgcagca
acgggaaaggccatcctcaacggcatcgacagcatcaacaaggttctggaacatttccgc
cggaaaggaatcaaccagcacgtcattaacgggtaccacggcatcgtcatgaacaatttc
gagtgtgagcccgccttttacacctgcgtggaggtgactgcgggaaccagattgttctac
cacatcgtggagactgacgaggtgagcacgaaaatcctgatggagtttaacaagatgaac
ttgcccggagaggtcaccttcctgcccctcagcaagctggacgtccgggacactgcctac
cccgagaccaacgacgccatcccgatgatcagcaaactgcgctacagcccgaactttgat
aaagccttcaagcacgtgtttgggaagacgctcatctgtcgcagcatggaggtctccaca
cagctggcccgagccttcaccatggactgcatcactttggagggagaccaggtgagtcac
cgcggcgctctcaccggcggctactacgacaccagaaagtctcgcctggagctccagaag
gacatgcgcaaggcggaggaggagctctccgagctggaggccaaactcaacgagaacctc
cgcaggaacatcgaacgcatcaacaacgagatcgatcagctgatgaaccagatgcagcag
atagagacgcagcagaggaagttcaaggcctcgcgagacagcatcctgtccgagatgaag
atgctgaaggagaagaggcagcagtcggagaaaaccttcatgccaaagcaacgcagtctt
cagagtctggaggccagtctgcacgccatggagagcacacgtgagtcactgaaggccgag
ctcggcaccgacctcctctctcagctcagcctggaggaccagcgccgcgtcgacgacctc
aacgacgagatcagacaacttcagcaggacaacaggcagctgctgaacgagagaattaaa
ctggagggcattatgaccagggtggagacgtatcttaacgagaacctgcgcaaacgcctg
gaccaggtggaacaggagctgaacgagctgagggagaccgaaggaggaaccgtcctcacc
gccactacatccgagttggacggtatcaataaacgcgtcaaagacactatggcccggtct
gaggacctggacacactgatcgataagaccgaggtggagatcaaggaccacataaaaagc
atggagcgctggaagaacatcgagaaggagcagaacgaggccatcaaccacgacaccaag
gagctggagaagatgaccaaccggcagggcatgctcctgaagaagaaggaggagtgcatg
aagaagatccgcgagctcggctccctgccgcaggaggccttcgagaagtaccagacgctc
acgctcaaacagctcttccgcaagctggagcagtgcaacacggagctgaagaagtacagc
cacgtgaacaagaaggccctggaccagttcgtcaacttctccgagcagaaggagaagctg
atcaagaggcaggacgagctggacagaggctacaagtccatcatggagctcatgaacgtc
ctggagctgcggaaatacgaagccatccagctcacgttcaagcaggtgtcgaagaacttc
agcgaggttttccagaagttagttcccgggggcaaagccactctggtgatgaagaaaggg
gacgccgagggggggcagtctcaggatgagggggagggcggagccgacagcgagaggggc
tccgcctcacagagcagcgttcccagcgtggaccagttcaccggagtcgggatcagagtg
tccttcacggggaagcagggagagatgagggagatgcagcagctctccgggggacagaag
tctctggtggcgcttgccctcatcttcgccattcagaagtgcgaccccgcccccttctac
ctgtttgatgagatcgaccaggctctggacgcgcagcacaggaaagccgtgtcggatatg
atcgtggagttggcgggacacgcacagttcatcaccaccaccttcagacccgagctgctg
gagtcggcagacaagttctacggagtcaaattcagaaacaaggtgagtcacatcgacgtg
atctccgccgagcaggccaaggacttcgtggaggacgacaccactcacggctaa
DBGET
integrated database retrieval system
