Clarias gariepinus (North African catfish): 128519228
Help
Entry
128519228 CDS
T10780
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128519228 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128519228 (smarcc1b)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128519228 (smarcc1b)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128519228 (smarcc1b)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128519228 (smarcc1b)
PBAF complex
128519228 (smarcc1b)
GBAF(ncBAF) complex
128519228 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
128519228
NCBI-ProteinID:
XP_053348848
LinkDB
All DBs
Position
3:18932183..18943287
Genome browser
AA seq
976 aa
AA seq
DB search
MAAQTAGSAGEKAAGSSALSRRKDGGPCAEFWESAETVSQLENIRTWIGKHYKKYVQVDA
PSSKALSGLVIQLLQFQEDAFGRKASDPGLTKLPVKCFLDMKPGGALCHILGSVYKFKTE
QGWRRFDLQNPSRVDRNIEMFLSVEKTLVQNNLLSRPVVYLSPELDQKQANKFKDIIMRH
KGSVTEDRVQASHHIYPTPASGEEDDWFRPVLRVSQHVVVHWGMYPDSYDTWVSVSDADV
DVEEAPPSERPWKVHAKWLLDTDVFNEWMNEEDYEVDESKRGVVFRRRIYPRDEEECKTS
GKKRRRSPSPPSSESRKKGGKKGSYKRRGQQEEAEPEEDLTKDMEDPTPVPNMEEVKLPK
NVNLKKDSENTPVKGGTMTDLDDQDDEFMSGVRDEEEREFGRGLEGEESATEQTHHIIIP
SYASWFDYNCIHRIERRALPEFFNGKNKSKTPEIYLAYRNFMIDSYRLNPQEYLTSTSCR
RNLTGDVCALIRVHAFLEQWGVINYQVDAESRPLPMGPPPTPHFNVLTDSPTALVPLQHR
PLQVTASQHMLHFPEKSREKPSDLQNFGLRTDIYAKKHPKTKGANAGREWTEQETLLLLE
ALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSEASMGPLAYQPVPFSQSGN
PVMSTVAFLASVVDPRVASAAAKAALEEFSQVRERASPELLNPPVLKIQDPGQSLAELEP
TFGMPSSTISGPETGPLEKTEGTRLERLEFDTDHHEKVMGESTAGEGEQVKNEEKDETEG
EKEGESKAEEGLELVQAHGEHGERRRGAELDLVEANIATAAAAALASAATKAKHLAAVEE
RKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHLEQVKY
AELKARQQLEQQQGGVSQSSGAAAFNPPHHGRTVGSAAAGQMMSVQHSGAPNGTYPTPPS
SQSEGATPISRPPMDS
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagaccgcgggctcggcgggagagaaggcggccggcagctccgcactgagc
cgcaggaaggacgggggtccgtgtgctgagttctgggagagcgcggagaccgtgtcacag
ctcgagaacatccgcacctggatcgggaagcattataagaagtatgtgcaggttgacgct
ccttccagtaaggctctctcaggactggtcatccagctcctgcagtttcaggaggatgcg
ttcggccgtaaagccagtgacccgggcctcactaaactgccggtgaagtgttttctagat
atgaagccagggggcgctctctgtcacatccttggttctgtctataagtttaaaaccgag
cagggctggcgtcgcttcgacttgcagaacccgtcccgagtggaccgcaacatagagatg
ttcctcagtgtggagaaaacacttgtacagaataatcttctgagcaggcccgtggtgtac
ctttcacctgagctggaccagaagcaggccaacaaattcaaagacatcatcatgagacac
aagggttcggtcacagaggacagggtacaagcttcccatcacatctaccccacccctgcc
tcaggagaagaagatgactggttcagaccggttctgcgggtcagtcagcacgtggtggtc
cactggggcatgtatcccgacagttatgacacgtgggtgtcggtcagtgacgctgacgtg
gacgttgaggaagctccgccttcagagcggccgtggaaggtccatgcgaagtggcttctc
gacacagatgtgttcaacgagtggatgaatgaggaagactacgaggtggacgagagcaaa
aggggcgtagtgttccggaggcgcatctaccctcgggatgaggaggaatgcaaaacgtct
gggaagaagcgacggcggtccccctcaccaccctcatctgagtccaggaagaaaggaggg
aaaaagggttcatataagaggcgtggccagcaggaagaggcggagcctgaagaagacctg
actaaagacatggaggacccgacaccagtgcctaacatggaggaggtcaaactgcctaaa
aatgtaaacctgaagaaggacagcgagaacacaccagtgaaaggaggaaccatgactgac
ctggacgaccaggatgacgagttcatgtctggagtcagggatgaggaggagcgggagttt
gggcgtgggctggaaggagaggagagcgccacagagcagactcaccacatcatcataccc
agctacgcctcttggtttgactataactgtattcatcggatagagaggagagcactgccc
gagttcttcaatgggaagaacaagtccaaaacaccagagatatatttggcttatcgtaac
ttcatgatcgactcgtaccggctaaaccctcaggagtacctgacctccacctcctgcaga
cgcaacctcacaggagacgtgtgtgcacttataagggtccatgcgttcctggagcagtgg
ggtgtgatcaattaccaggtggatgctgagagcagacctctccctatgggtcctccaccc
acacctcactttaacgttctcacagacagtcctacagcgctggtccccctgcagcacaga
ccattacaggttacagcctctcagcacatgctccatttccctgagaagagcagagaaaag
ccttcagaccttcagaacttcggcttacgaactgatatttatgcaaagaagcatcccaag
actaaaggagcaaacgcaggacgtgagtggacggagcaggagactctgctgcttctggag
gcattagagatgtataaagatgactggaataaggtctctgagcatgtggggagccgcaca
caggacgagtgtatcctgcacttcctgcgcttgcccatagaggacccatacctggagaac
tcggaggcctcgatgggtcctctggcctaccagcctgttcccttcagccagtcagggaac
cccgtcatgagcactgtggccttcctcgcctcggtggtggacccccgagtcgcctctgct
gctgccaaggctgccctggaggagttttcccaggttcgagaacgcgcttctccagagctg
ctcaatccccccgtcctcaaaatccaagatcctggacagagtttagcagaactcgagccc
acctttggaatgccgtcaagtaccatatccggacccgagacaggccccctggaaaagacg
gaagggaccagactggaaaggctggagtttgacacggaccaccatgagaaggtgatgggc
gagagcactgcaggagagggagagcaagtgaaaaatgaagaaaaggatgagactgaagga
gagaaagaaggggagagcaaagcagaggaaggtttggagttggtccaggcccacggggaa
catggcgagagaaggaggggggcagaacttgacttggtggaggcgaatatcgccacggcc
gctgcagctgccctggcctctgctgccaccaaggccaagcacttggccgctgtggaggag
aggaagatcaagtctctggtggctctgctggtggagacccagatgaagaagctggagata
aagctgaggcacttcgaggagctggagaccatcatggaccgggagaaggaggctctggaa
cagcagcgacagcagttgctatcagagaggcagaacttccatctggagcaggtgaagtac
gctgagctaaaggcgcggcagcagctcgaacagcagcagggtggagtctcgcagagcagc
ggagccgccgcctttaatcctcctcatcatggtcgcaccgtgggcagtgcagcagcgggg
cagatgatgagtgtgcagcacagcggcgctcctaacggcacatacccgaccccaccttcc
tcccagtctgaaggggccacgcccatttcccggcccccgatggacagctga
DBGET
integrated database retrieval system
