Clarias gariepinus (North African catfish): 128519395
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Entry
128519395 CDS
T10780
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04145
Phagosome
cgar04814
Motor proteins
cgar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
128519395
09142 Cell motility
04814 Motor proteins
128519395
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128519395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128519395
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cgar04812
]
128519395
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
128519395
Cytoskeleton proteins [BR:
cgar04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
128519395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Dynein_IC2
WD40
Beta-prop_EML
WDR55
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_TEP1_C
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
128519395
NCBI-ProteinID:
XP_053349088
LinkDB
All DBs
Position
3:28302327..28373123
Genome browser
AA seq
628 aa
AA seq
DB search
MADKSDLKAELERKKQRLAQIREEKKRKEEEKKKKESEIQQKAEAAPEDSDLDRKRRETE
ALLQSIGISPEPPLVPAQMSPSKSMSTPSETGSQDSVEGTSVGRTLQWDTDPSVLQLQAD
SELGRRMHRLGASKITQVDFLPKEVVSYSKETQTPLAAHQSEEDEEEDEDNTEPKAGLES
DQKEDEESKDTKEGHPRELTEEEKQQVLHSEEFVIFFDRSIRVMERALAEDSNIFFDYSG
RDLEDKEGDLQGGSILSFNRLFYDEHWSKHRVITCLDWSPQYQELLVASYNNNEDAPHEP
DGVALVWNMKFKKTTPEYIYHCQSPVVSVGFARFHPNLLVGGTYSGQIVLWDNRSHRRTP
VQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTDGRMCSWSLDMLSQPQESMELVYNKS
KPVAVTGMAFPAGDVNNFVVGSEEGTVYTASRHGSKAGICEMFEGHQGPVTGISCHSAVG
PVDFSHLFVTSSFDWTVKLWSTKHNKPLYSFEDNADYVYDVMWSPVHPALFAAVDGMGRL
DLWNLNNDTEVPTASVTIEGAPALNRVRWASGGKEVAVGDSEGRLWIYDVGELASAHSED
WTRFARTLVEIRANRADAEEEGPVELAS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagtgacctaaaagctgagctggagcgcaagaagcaacgtttggctcaa
atcagggaggagaagaaaagaaaagaggaagagaaaaagaaaaaagagtcagaaatacaa
cagaaggcagaagctgctcctgaggactcagatctggatcgtaagcgcagagagacagag
gcgctgctccagagtattggaatctcccctgagccaccattagtcccagcacaaatgtct
ccatcaaaatcaatgagcacaccgagtgagacagggagtcaggactcagtggaagggacg
agtgtgggcaggaccctgcagtgggacactgacccctctgttctccagctgcaggctgat
tctgagctcgggcgcaggatgcacagattaggagcttccaagataacccaggtggatttc
ttacccaaagaggtggtttcctactctaaagagacacagactcctctagcagcacatcag
tcagaagaggatgaagaagaggatgaagataatacagaacccaaagcaggcctggagtca
gaccaaaaggaggatgaagagagcaaggacacaaaagaaggccacccacgggagctgaca
gaagaggagaagcagcaggttctgcactctgaggagttcgtgatcttctttgaccgcagc
attcgtgtgatggagcgagctcttgctgaagactccaacatcttttttgattacagtgga
cgagatctcgaggataaagaaggagacctgcagggagggtcaattctgtcctttaatcgt
ctgttctacgatgagcactggtctaagcatcgggtcatcacctgtctggattggtcccct
cagtaccaagaactgctggtggcctcatataacaacaacgaagatgctcctcatgagcca
gacggtgtggctttagtttggaatatgaaatttaaaaagaccacgcctgagtacatctac
cactgccagtctcctgtggtgtccgtgggctttgcccgttttcatcctaatctattggtg
ggtggtacgtactcagggcagatcgtcctgtgggacaaccgcagccaccgtagaacccca
gtccagagaacgccgctctccgcagccgcacatacccatccagtatactgtgtcaacgtg
gtgggaacccagaatgccaacaacttgatcacagtgtccacagatggccggatgtgctcc
tggagcctggatatgctctcccaaccacaggagagcatggaactggtttataataagtct
aaaccagtagcagtgactgggatggcctttcctgctggggatgtcaataattttgtggtg
ggcagtgaggagggaacggtgtacacagcctccaggcatggcagtaaagctggtatctgt
gagatgtttgagggccatcagggaccagtgactggtatcagctgtcacagtgccgtgggt
ccagtagatttttcccacctgttcgtcacttcatcttttgactggactgtcaaactctgg
agcacaaagcacaacaagccgctgtactcttttgaggacaatgctgactatgtgtacgat
gtcatgtggtctccagtgcatcccgcgctcttcgctgcagtggacgggatgggccgtctc
gatctgtggaacctaaacaatgacactgaggtgcccacagccagcgtgaccatcgagggt
gctcctgccctgaaccgagtgcgatgggcttcaggaggcaaggaggtggctgttggagac
tcagagggccggctctggatttatgatgttggagagctggcatcggcacacagtgaggac
tggactcgcttcgcccgcacgctagtggagatccgtgccaaccgagctgatgctgaggag
gagggccctgtggaactggcatcatag
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integrated database retrieval system
