Clarias gariepinus (North African catfish): 128519619
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Entry
128519619 CDS
T10780
Symbol
utp18
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128519619 (utp18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cgar03009
]
128519619 (utp18)
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
128519619 (utp18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40
WDR55
WD40_WDHD1_1st
ANAPC4_WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_HPS5
PROPPIN
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_VPS8
KNTC1_N
Beta-prop_EIPR1
Cytochrom_D1
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
DUF7165
Beta-prop_NOL10_N
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
128519619
NCBI-ProteinID:
XP_053349383
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Position
3:complement(37055288..37063232)
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AA seq
522 aa
AA seq
DB search
MMEGKSARAKVKRPRLEADGVRVDAAREEQERNRHTQELKALGEEESSVRLLEELVFGGE
EGLLQRLQHDDDDDDEKEDEDSSDSEVENEARLQVPTERRAVWEDEDDDVEENVDMTHRF
RKDFIRSDAEAAMSKQRVHQRLKEQFQKAMGGVPSWAESTVKKSKRKGDDDEDEDDDDED
NELMQRTGNYIAASETLPKGIIKIKKCLNANNANPGEGRLTSVQFHTSAQVILTAGLDHT
VSLFQVDGKTNPKIQSIHLENFPVNKARFSADGEQVVATGLRNKLFYIYDMMEGKIIPVP
RVKGLNEQRVKEFEVSPDGQFLLLTGSSGFLHLMTMKTKEVVRSVKVNGSVCAAAFNSDG
SKIFTNSEDGEVFIWDVRSSKCVNRFGDDGCVTATSLAVSKDDRYLACGSQSGVVNIYSQ
KECVNSSSPKPLKCVMNLLTAATSLRFNPTSEILAISSRSEDEATRLVHIPSFSVFSNFP
LFRKKTIYRPHCLDFSPHSGFYSIANDKGQALLFRLLHYTDF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggggaaatcggcgcgcgctaaagtgaagaggccgcggttagaggcagatggt
gtgcgcgtggacgcagcgcgtgaggagcaggagaggaacaggcacacgcaggagctaaag
gcgttaggggaggaggagagctctgtgaggctcctggaggagctcgtgttcgggggggag
gaggggctgctgcagcgcctacagcacgatgatgatgatgatgatgaaaaggaggatgag
gactcgagtgactcagaggtggagaatgaggcgaggctgcaggtccccacagagaggaga
gccgtgtgggaggatgaggatgatgatgtggaggaaaatgtggacatgacgcatcgtttc
cgtaaagacttcattcgcagtgacgccgaagcggctatgtccaaacagagagtgcatcag
cgcctcaaagagcagttccagaaggcgatgggtggcgtcccatcctgggcggagtccact
gtaaagaaaagcaagaggaaaggtgatgatgacgaggacgaggatgatgatgatgaagat
aatgagttgatgcagaggacaggaaactacattgctgcatcagaaactctccctaaaggc
attattaagataaagaaatgtctgaatgctaacaacgctaacccaggtgaaggtcgcctg
acctcggtgcagttccacacctccgctcaggtgatcctcaccgccggtctcgaccacacc
gtctccctgttccaggtggatggtaagaccaacccaaagatccagagcatccacctggag
aacttcccagtgaataaggcaaggtttagcgcggacggagagcaggtggtggccacgggc
ctgaggaacaagctcttctacatctacgacatgatggaggggaagattatccccgtgccc
agggtcaaaggtctgaatgaacagagagtcaaggagtttgaagtgtctcctgatggacag
ttcctgctcctcaccggttcctctgggttccttcaccttatgacaatgaagacgaaggag
gtggttcgcagtgtgaaggttaatggcagtgtgtgtgctgcagcatttaactcagatggc
agtaaaatcttcaccaactcagaggacggtgaggtgttcatttgggacgtgaggagcagt
aagtgtgtgaaccggtttggagatgatggctgtgtgactgctacatctctcgctgtgtct
aaagacgatcgatacctggcctgtggttcccagtcgggtgtggtgaatatctactcccag
aaggagtgtgtgaacagttcgtctcctaaacccctgaagtgtgtgatgaacctgctgacg
gccgccacctcgctcagattcaaccccacgtctgagatcttagccatcagctctcgctca
gaggacgaagctacgcgcttggtccacattcccagcttcagtgttttttccaacttcccc
ctattccgcaagaagactatctacagaccgcactgcctcgacttctcacctcacagcggc
ttctactccatcgctaatgataaaggacaggctctactcttcaggctgctgcactataca
gacttctga
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