Clarias gariepinus (North African catfish): 128519632
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Entry
128519632 CDS
T10780
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128519632 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128519632 (xab2)
03041 Spliceosome [BR:
cgar03041
]
128519632 (xab2)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128519632 (xab2)
Spliceosome [BR:
cgar03041
]
Complex B
Other components
Prp19-related factors
128519632 (xab2)
Complex C
128519632 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_19
TPR_12
TPR_8
TPR_16
ARM_TT21_C
TPR_15
ARM_TT21
TPR_MalT
NRDE-2
RPN7
TPR_1
Tcf25
PPR
Motif
Other DBs
NCBI-GeneID:
128519632
NCBI-ProteinID:
XP_053349401
LinkDB
All DBs
Position
3:complement(33022789..33030949)
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AA seq
848 aa
AA seq
DB search
MAISNGKRDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTDPVYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCK
ITRSRRTFDRALRALPITQHSRIWPLYLKFVRKLPLPETAIRVYRRYLKLSPENVEEYID
YLRSVGRLDEAAVRLAAVVNDEGFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGLFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQDEDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGIPRQIINTYTEAVQTVDAVKATGKPHSLWVSFARFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERSTQAVEPEERHLMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRARAIYSYCSQMCDPRMTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNVTVSDLAPGQSGIDDMKMLEQKAQQLAAEAEQDK
PKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDEEKEDEDEEPDEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcaatttccaacggaaagcgagacgttgtgtttgaggaagatgatttgccttacgag
gaagaaatcatcaggaacccgtactcagtaaagtgctggatgcgctacattgagcacaaa
cagaacgcaccaaagtctgtgctgaatatgatttacgagcgagcacttaaagaattgccc
gggagttacaaattgtggtacaattacctgagagagaggaggaagcagatcaaaggaaaa
tgcgtcacagacccagtgtatgaggaggtcaacaactgccacgagagagcgctggtgttc
atgcacaagatgccgaggatatggctggattattgtcagttcatcgtgtctcagtgcaaa
atcacaagaagccgtcgcacatttgatcgagcgctcagagccctacccatcacccagcat
tcccggatctggcccctttaccttaaatttgttcggaagttacccttgcctgagaccgcc
attcgggtttaccgccgatatctcaagctttctccagaaaacgttgaggagtacattgat
tacctgcgctctgtaggacgcctggatgaggcagcggtccgcttagcagccgtggtcaat
gacgagggctttgtctcgaaagagggaaagtcgaactaccagctctggcacgagctgtgt
gacctcatctcccagaacccagacaaggtgacctcactgaacgtcggtgccatcatccgc
ggcggtcttacccgcttcacggatcagctgggcaagctctggtgctcactggctgattat
tacatccgcagcggcctttttgagaaggcacgtgatgtgtacgaagaggcaattcagacc
gtggtcactgtccgagacttcactcaggtgttcgacagctatgctcagtttgaagagagc
atgatcgctgctaagatggaaaccacgtctgaaatgggacaggatgaagacgatgatatc
gatctggagttgcgtctggcccggttcgagcagctgatcacgcgcaggccgctcttattg
aacagcgtgctgctgcgtcagaacccacacaacgtccacgaatggcacaagagagtcaaa
ctgtatgaaggcattcctcgacagataataaacacctacactgaagcggtgcagactgtg
gacgctgtgaaagccacagggaaacctcactcgctctgggtctcctttgctcggttctac
gaggaaaacgaacagctggacgatgccaggacgatctttgagaaggccacaaaggtcaac
tacaagcaggtggatgacctggcggcagtgtggtgtgagtatggagagatggagttaagg
cacgagaactacgaccaggcattacgtatacttaggaaagccacagcaatcccgtcgaga
aaagcagagtacttcgattcgtcagaaccagtgcagaaccgagtgtataaatccctgaag
gtctggtccatgctggcagatttggaggagagccttgggaccttccagtcaactaaatct
gtgtatgaccgcatcattgacctccgcatcgccacacctcagatcatcatcaactacgcc
atgttcctcgaggaacacaattactttgaagaaagcttcaaggcgtatgagcgcggcatc
gctctcttcaggtggccgaacgtgtacgacatctggaacacatacctcaccaaatttatc
gaccgctacggagggaagaagctggagagagcacgtgacctgttcgagcaggctttggac
gggtgtccacccaagtttgcaaaaaccatctacctgctgtatgctaagctggaggaggag
tatggactggctcgtcacgctatggctgtgtacgagagatcaacgcaggctgtggagcct
gaagagcgccaccttatgttcaacatctacatcaagagagcagcagagatctatggcgtc
actcacaccagagccatctatcagaaagccatcgaggttctcccggatgagcattctcgg
gacatgtgtctccgctttgctgacatggagagcaaactgggtgagatcgatcgagccaga
gctatttactcctactgctcccagatgtgtgatcccaggatgacggctaatttctggcag
acgtggaaggagtttgagattcggcacggtaacgaggatacgatccgcgagatgctccgg
ataaagagaagcgtccaagcgacctacaacacgcaggtcaacttcatgtcctcgcagatg
ctcaaagcaaccactaatgttacagtttcagaccttgccccaggccagagtggtattgat
gacatgaagatgttggagcagaaagcacagcagctggctgcagaagctgagcaggataaa
cccaaacctaaagacaagattctcttcgtcaggagtgacacatctcgcagcgaactggct
gaactggccaaacaggctaacccagacgagatcgacatcgatgacgatgatgaggagaag
gaggatgaagatgaagaacccgacgaggtgcagctcgagcagaagagtgtccctacggct
gtgtttggaggactgaaagatgactga
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