Clarias gariepinus (North African catfish): 128519999
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Entry
128519999 CDS
T10780
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128519999 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128519999 (arid1aa)
03021 Transcription machinery [BR:
cgar03021
]
128519999 (arid1aa)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128519999 (arid1aa)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
ARID
128519999 (arid1aa)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128519999 (arid1aa)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128519999 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
128519999
NCBI-ProteinID:
XP_053349987
LinkDB
All DBs
Position
4:complement(25377472..25402789)
Genome browser
AA seq
2243 aa
AA seq
DB search
MAAQVASATSLNSSPPSELKKADRDPKEESVPVEKQQENKEPGSEIGSPGRGELHERPEP
GNATGGGGGGESEMKNGNGNPPRLTNNQNDPTGPEANNHPGMAHQHHGSGFPPPSYPYSH
HYARGPFHQHGGQQSPGMAAAAPSNMMEPYGPNSHDHGFPNHQFNSYGQFPNRAPYPSPG
YAMNSPRSAPAQAAKQQQQQPAGGSPTMAASYNNQRYNISNPQATSTPTLNQLLTSPSSS
RGYSNYPPSDYNNQEGANKGATDLNAAAQYGGGHPGWQQRSHHPPPMSPGSTPQTLGRTQ
TPGSMDQMGKMRGQPYGAGSPYSQQHQGPPGGQQGPAYPGQGYGPPGPQRYPMAMQGRMQ
YGQQMAYGQQGPGGYGQQGQQPYYSQQGPGTHPGQQQSPYPHPPQPSAPHGQGGHTYPPS
HMPQQSQGSLGAAPPGPPQSQPPYSQPPTPQSTQSPYPQQQTPQSQPPPQGASQAPPASQ
AQSNYTHSQGAQQPPSQQTPQASTPASQQPTVQGPPSSYSQNPSQQQSSYQRFPPPPQEI
SQESFSSQSSATASSQPVASTKSSSEDMQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTS
GVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASATASRSGPLSPAAMPGNQM
PPRPPSGQSDGILHPGMNQPSMGQDRAGFMQRNQMPPYGSPQSGSALSPRQSSGGQMHGG
MGPFQQNNSMGSYGPQGGQYGPQGYQRQPGYGGMPNANYPGPGMGGSMNPMSGQGGGPPF
TSMPPSRMPHAQMGGRPYGPNMGPNMGPNMGPNMGNIPPQVGAAMCPPPGLNRKPQEAAA
AMQHGSTNSIHNRMPGYPNMSPGMMGSGPPYGPSMNNMPGMMNTQGAPFPMGANMPNNSS
GMSPGPEFGMDGKLNQAQKMNNKAEGTPKSDSKSKKSSSSTTTNEKITRLYELGSEPERK
MWVDRYLAFIEEKAMGMSNLPAVGRRPLDLFRLYMSVKEIGGLTQVNKNKKWRELATSLN
VGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIMTAESKKNQAKVQPPSPAGSGSLQ
GPQTPQSTTSSMAESGDLKPPTPASTPHSQMPSMQSGRSSVNLQDPFADGSDPAFSRRNT
MTPNSGYQSGMSTPEMPGRMGPYEPNKDPFSGMRKVGEPFMAGGQGPNSNLGDQFNRGSA
GPIGNMPMAQRQQYPYGTGYERRPEAGMGPENNMGPGVPQPNMMPSNTDTGMYSPNRYPA
QQQRHDSYGNQYPGQGAPPGGSYPNQQPGMFPQQQTNYKRPGEGGYPPAKRHHDGEMYGG
PFGGQQPQQQPQAPPNAPSSAQPEMYNQFSSSYPGPERRPPGPQNQFPFPFGRDRMQPGA
GPNSQGSMPPQMMGTSMQSGPDGPQAGMWQNRGEMGYPNYPNRQGPLAGPAQGPGYHSMN
RSEEMMSSEQRINHEGQWPGPRQATYGPAGAGPPMSRPLQSNYQSPQTMQNHIPQVSSPT
PMPRPMESRTSPSKSPYMHSNIKMQKAGPPVPASHIIPSPVQPPMMRRDPPFPPGSIEAT
QPVLKPRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISNFNLIQL
PGFLELIVEYFRRCLIEIFGILREYEVGDPGQRTLLDPNALKEGDNDEDEEEPVVMGSDD
DGETEEEGDGEEDSSQPQIKTEKKVCESNKDEEGKVMENLLPTELKTTEAPPLDLCMTQE
RPKQASKFDKLPLKVVKKKDPFVVDCSGKLGRLQEFDSGLVHWSIGGGDTTEHIQTHFES
KIDLLQSRNRSQPTQTCRRKKAPEKMESEAPVVPSCSVERRKEEEQTQPQQSSTRQLTDC
LSQEKEEKPANVPESSLEPVSQKEEVELEGLNQEASKPALSKIIFSSQSAVTVLEDEPHS
KDEAPLITLSDWQDSLARRCVCVSNIVRSLSFVPGNDLEMSKHPGLLLLLGRLVLLHHRH
PERKQAPLTYEKEEEADKDIGLKDEWWWDCLELLRENCLVTLANISGQLDFSIYSESICL
PLLDGLLHWAVCPSAEAQDPFPTLGLNAALSPQRLVLETLSKLSIQDNNVDLILATPPFS
RLEKLFGNLVRLVGDRKVPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDS
LAATQFQQSQGSMMHMQVAHFEPTSVDMMRRAARALHALAKVEENHSEFTLYESRLLDLS
VSPLMNSSVSHVICDVLFLIGQS
NT seq
6732 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctacctctctcaacagcagcccgccttccgagctgaaa
aaagcggaccgagacccaaaggaggagtcggtaccggtcgagaagcagcaggaaaataag
gagccgggatcagagatcggatcaccgggccgcggcgagctgcacgagcggcccgagcct
ggcaatgctacgggaggaggaggaggaggggagtccgagatgaagaacggcaacggcaat
cctccgcggctcacgaataatcaaaatgatcccactggacccgaagcgaataaccacccg
ggcatggcccatcagcaccacgggtccggttttccgccaccgtcctatccctacagtcac
cactacgcacggggcccttttcatcaacatggcggacaacaaagccctggcatggcagcc
gcggcacccagcaacatgatggagccgtatggaccgaactcacacgatcacggttttccg
aaccatcagtttaacagctacggacaatttccgaaccgagcgccgtatccgagcccgggc
tacgccatgaactcgccgcgcagcgctccggctcaggcggctaagcagcagcagcagcag
ccagcgggaggatctccgactatggccgcgtcttacaataatcagcgctataatatttca
aatccacaggccacgtccacaccgactctaaatcaactcctaacctcgccgagctccagt
cgcggatacagcaattacccgccgagcgactacaacaaccaggaaggcgctaacaaggga
gccacggatctcaatgctgctgcccagtatggagggggccatccgggctggcaacaaagg
agccatcacccgccacccatgagcccgggaagtacgcctcaaaccctcggcagaacccag
actccaggttctatggatcagatggggaagatgcgaggccagccatatggagcaggtagc
ccgtactcccaacagcaccaaggacctccagggggccagcaaggtcctgcatacccaggc
caaggttatgggcctcctggccctcagagataccccatggctatgcagggtcgcatgcag
tatggtcaacagatggcatatggacagcagggaccaggtggttatgggcagcaagggcag
cagccttattacagtcagcagggcccaggaactcacccgggtcagcaacagtcaccatat
cctcaccctcctcagccatctgccccacacggacagggtggccatacctacccaccgtct
cacatgcctcagcagtcccaagggtcgctgggagcagctcccccagggccaccccaatcc
caacctccctactctcagccccctacaccacagtctactcaatccccataccctcaacag
cagacaccccagtcgcagcctcctccacagggagcctctcaagctcctccagcatcccag
gcccagtccaactatactcacagccaaggagcccaacaaccaccatcacagcagacccca
caagcatctacgccagcttcccagcagcccacagttcaggggccgccatcctcatactcc
cagaatccttcacagcaacagtcatcgtatcagcgttttcctcctcctcctcaggagatt
tcccaggaatcctttagttcacagtccagtgctactgcctctagtcagcctgtggcgtcc
acgaagagctcctctgaggacatgcagggacgaccctccagtctacctgatttgtcaggc
tccattgatgacttgcccactggtactgagggagcgctcagtcctggtgttagtacatct
ggagtgtctagcagtcagggtgagcaaagcaatccagcacagtctccgttttcccctcac
acatcccctcatctaccaggcatccgtggcccttcaccctctcctgttggctcacctgct
agtgccactgcatcccgctctggacccctatctccagcagcaatgccaggtaaccagatg
cctccacggccgcctagcggtcaatcagatggtattttgcaccccggtatgaatcagcct
agcatgggccaggacagagcaggatttatgcaaaggaaccaaatgccaccttatggctct
cctcagtctggctctgcattgtcacctcggcaatcatctggaggtcagatgcatggtgga
atgggaccttttcagcagaataactctatgggcagctatgggcctcaggggggccagtat
ggcccacaaggttaccaaaggcaaccaggttacggtggcatgccaaatgccaactaccca
ggccccggcatgggaggatccatgaatcccatgtctgggcagggaggaggaccacctttt
acttcaatgccacctagtaggatgccacatgcacagatgggtggacgcccttacggtcca
aatatgggccccaacatgggtcctaacatgggccccaatatgggcaacatacctccacag
gttggtgctgcgatgtgcccaccaccaggcctcaacagaaagccgcaagaagcagcagct
gcaatgcagcatggatctaccaattccatacacaacagaatgcctggttatcccaacatg
tctcctggtatgatgggctcaggacctccgtatgggccatccatgaacaacatgccagga
atgatgaacacccaaggcgcacccttccccatgggtgcaaacatgccaaacaacagcagc
ggtatgtcccctggtccagaatttggtatggatgggaaactcaaccaggcacaaaagatg
aataacaaagctgaagggacacccaagtcagactccaaatccaagaagtcaagctcttca
acaacaaccaacgagaagatcactcgtctgtatgagcttggttctgagccagaacggaag
atgtgggtggaccgttacttggcgttcattgaggagaaggcaatgggtatgagcaaccta
cctgccgtcggtcgaaggcccctcgatctctttcgcctctacatgtccgtcaaggagatt
ggaggtctgacgcaggtcaacaagaataaaaagtggcgagagcttgccaccagtctgaat
gttgggacgtccagcagtgcggctagctcactaaagaagcagtacatccagtgtctgtat
gcttttgaatgcaagattgagcgtggagaagatccaccacctgacatcatgactgcagag
agcaagaaaaaccaggctaaggttcagccaccctccccagctggatctggttcactacag
ggacctcagaccccacagtccacaaccagctctatggctgaaagtggggatttgaagcct
cctacgcctgcttctaccccacacagccagatgccctcaatgcaaagtggcaggagcagt
gtgaacctccaggatccatttgctgatggcagtgacccagcattttctagaagaaacacc
atgactcccaactcgggctaccagtctggcatgagcactccggaaatgcctggccgcatg
ggtccttatgagcccaacaaggacccatttagcggcatgcgtaaagttggggagcctttc
atggctggcggacaaggtcccaatagcaaccttggggatcagtttaaccgtggatcagca
ggtccgattgggaatatgcccatggcacagaggcagcagtatccatatggaacaggctac
gagagaaggccagaagcagggatgggcccagaaaacaatatgggacctggagtaccacag
ccaaacatgatgccttccaacactgacactgggatgtactcaccgaatcgctacccagca
caacagcagcggcacgattcttatggtaatcagtatcctggccagggtgcgccacctggt
ggctcgtacccaaatcagcaaccaggaatgtttccacagcaacagactaactacaaaaga
cctggagagggaggctaccctccagcaaagcgccatcatgatggtgagatgtatggcggg
ccatttggtggtcagcagccacagcaacagcctcaggctcctcctaatgctccgtcatcg
gctcagccagaaatgtacaaccagttcagcagctcttaccctggacccgaacggcggcct
cctggaccacaaaaccagttccctttcccttttggaagggatcgcatgcagcctggcgca
ggccccaactcccaaggatccatgccacctcagatgatgggcacctccatgcagtcagga
ccggatggcccccaggctggtatgtggcagaatagaggcgagatgggctaccccaactat
ccaaacaggcaaggaccccttgctggacctgcacagggcccaggatatcacagcatgaat
cgttccgaagagatgatgtcatccgagcagcgaataaaccatgaaggacagtggccaggg
ccaaggcaggctacatacggcccggcgggtgccgggccacccatgagccgcccgctccag
tccaactaccagtctccacaaaccatgcagaaccacattccacaggtgtccagcccaact
cccatgccacggccgatggagagcaggacatctccaagtaaatctccttacatgcacagc
aacatcaagatgcagaaggcaggtccaccagtgccggcatcccatatcatcccttcacct
gtacagcctccaatgatgaggagagatcctccttttcctcctgggtctatagaggccaca
cagcctgttctcaagccacgcagacggctcacaatgaaagacattggcacaccagaagca
tggcgagtcatgatgtcactaaagtcgggtctgttagccgagagcacgtgggctttagac
accatcaacatcctgctgtatgatgacaacagtatctccaattttaaccttattcagctc
cctggattcttggaactaatagtggaatattttaggcgttgcctcattgagatcttcggc
attctaagagaatatgaagttggtgatccaggtcagagaaccctgctggaccccaatgct
cttaaagaaggagacaatgatgaagatgaagaggagccagttgtaatgggttcagatgat
gatggtgaaacagaggaggagggtgatggggaggaagattcgtcacaacctcaaataaag
accgaaaagaaggtatgcgaatcaaataaagatgaagagggcaaagtgatggaaaacctt
ttgcctacagagctaaaaacaacagaagcaccccctctagatctttgtatgactcaggag
aggccaaagcaggccagcaagtttgataaacttcccttgaaagtagtaaaaaagaaggat
ccatttgtggtagactgctctggcaaacttgggaggcttcaggagtttgacagtggcctg
gtgcactggagtattggtggaggtgatactacagagcatattcagacccactttgagagc
aagatagacttactacagtcaaggaacaggtcacagcctactcagacatgtagaaggaaa
aaagctcccgagaagatggagagtgaggcacctgtagtcccctcgtgtagtgtggaacga
agaaaagaggaggagcaaacgcaaccacagcaatcctctaccagacagttgacagattgt
ctttcacaagaaaaggaggagaaacctgccaatgtcccagagtcttcactggaaccagta
tcgcagaaagaggaagtggaactggaagggttaaaccaggaggcaagcaagccggctctc
tccaaaatcattttttcctcacagagtgctgtcacagtcttggaggatgagcctcacagc
aaggatgaagctccacttatcacactttcagactggcaggactcacttgcccgccgctgt
gtctgtgtctccaacatagttcgcagtctttcgtttgttcctggcaatgatttggaaatg
tccaagcatccagggctgctgctgctattaggccgccttgtgctgcttcatcatcgtcat
cctgagcgtaaacaggctcctttaacctatgagaaggaggaagaagcagacaaggacatt
ggccttaaggatgaatggtggtgggactgtctggagctgctccgagagaactgccttgtc
acactggctaacatttcaggtcagcttgacttttccatctactccgagagcatctgcttg
cctctgcttgatggcttgctccactgggctgtgtgtccttctgcagaagcccaggatccc
ttccctactctggggcttaatgcagctttatctcctcagagactggtcctggaaactctc
agcaaactcagtatccaagacaataacgtggaccttattctggcaacacctcccttcagt
cgactggagaagctttttgggaatcttgtacgtctggtcggggaccgaaaggttcctgta
tgccgggagatggcagttgtgcttttggccaatcttgcccaaggcgacagccttgcagcc
cgtgccattgcggtacaaaaaggcagtataggaaaccttttgggcttccttgaggacagt
ttagcagcaacacagttccaacagagccaaggatccatgatgcacatgcaggtagcgcac
tttgaacctacaagtgtggacatgatgcgtcgggctgctcgggctctacatgcccttgct
aaagtggaggagaaccactcagagtttacactctatgagtcgcggctactggacctctca
gtctcccctcttatgaactcttcggtgtcccatgtcatctgtgatgtactttttctgatt
ggccagtcatga
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integrated database retrieval system
