Clarias gariepinus (North African catfish): 128520079
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Entry
128520079 CDS
T10780
Symbol
vars1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
128520079 (vars1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cgar01007
]
128520079 (vars1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgar03016
]
128520079 (vars1)
Enzymes [BR:
cgar01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
128520079 (vars1)
Amino acid related enzymes [BR:
cgar01007
]
Aminoacyl-tRNA synthetase
Class I (U)
128520079 (vars1)
Transfer RNA biogenesis [BR:
cgar03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
128520079 (vars1)
Prokaryotic type
128520079 (vars1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
Val_tRNA-synt_C
Arc1p_N_like
GST_C_2
GST_C_3
Jag_N
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
128520079
NCBI-ProteinID:
XP_053350078
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All DBs
Position
4:11366411..11391990
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AA seq
1267 aa
AA seq
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MDSLHVSSHPDDFKSLLVLIAAQYAPTQPRVCAKDCPKNVVHTCPALVLGGDDGTTLRGA
GAVGWYLCSSAKMVGSNAKQQSQVWEWLSFAENELIPPACSVAFPLLGVTGIDKKLQQSS
HGELLRVLKILDQALEPRTFLVGESLSLADVAVVTAVLLPFKYVLEPPKRKSLVNVSRWF
DTCVNQPQFQKVLGKISLCEKMVPVTPKPNPASTDAAGNTGTANGDTPKTEAQLKKEAKK
REKMEKFQQKKEMEEKKKQMQSQSEKKAKPEKKELGVITYNIKTPEGEKKDVLSPLPDSY
SPQYVEAAWYPWWEKQGFFKPEYGRKSISEVNPRGTFMICIPPPNVTGSLHLGHALTNAI
QDCLTRWHRMKGETTLWNPGCDHAGIATQVVVEKKLMRERGMTRHDLGREKFIEEVWKWK
DEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSYAVQESFIRMHEEGVIYRSKRLVNWSCT
LNSAISDIEVDKKELTGRTMLSVPGYKEKVEFGVLVSFSYKIEGSDEEVVVATTRIETML
GDTGVAVHPKDSRYTHLKGKVAIHPFCNRKLPIVFDDFVDMEFGTGAVKITPAHDHNDYE
VGVRHNLPFVNILDENGVLVNVPSPFLGMKRFEARKMVLQALKEKGQFKEIKDNPMVVPM
CSRSKDIVEPFLKPQWYVACAEMGRQAAEVVRSGELKIIPDHHLKTWFNWMDNIRDWCIS
RQLWWGHRIPAYFVTVNDPSVKPGEDVDGHYWVSGRSEEEAREKAAKRFNVTVDKISLRQ
DEDVLDTWYSSGIFPFSIFGWPNDNEDLRVFYPGTLLETGHDILFFWVARMVMMGLKLTG
KLPFKEVYLHAVVRDAHGRKMSKSLGNVIDPLDVITGISLEGLHEQLKDSNLDPLEIERA
KQGQKSDYPNGIPECGTDALRFALCAYTSQGRDINLDVNRILGYRHFCNKLWNAVKFAIK
TLGEGFVPWEKAQLSGSEGVSDKWILSRLSAAVALCENGFQAYDFPAITTSIYNFWLYEL
CDVYLESVKPVISRTDAEGKKQADICRQTLYTCLDVGLRLLSPIMPFVTEELFQRLPRRR
SKDSPPSISVTPYPETSEFCWHSEELDQQMEFVMTVVRTIRSLRADYNLTKTRPDCYLQC
IDSATASLVKKYSLQIQTLSYSQAIHLVIGNEQAIPEGCAVAIASDKCTIHLVLKGSIDV
EKEVVKLTTKKAELEKQMEKLQEKMKKSDYKEKVPAKVQEQDAEKLRQNQTELQKVTEAI
QNFRKMM
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggactctctgcatgtgtcctcgcaccctgatgacttcaagagtttactggtcctgatt
gctgctcagtacgctccgactcaaccacgtgtgtgtgctaaggactgtcccaaaaatgtt
gttcacacttgtcctgccttggttctgggaggagatgatggaacgactctgcgtggtgcc
ggcgctgtcgggtggtatctgtgctcttcagccaagatggtgggcagcaatgccaagcag
cagagccaggtgtgggagtggctgagctttgccgaaaacgagctgattcctccggcctgt
tccgtggccttccctcttttgggtgtaacgggcatcgacaaaaagcttcagcagagttct
cacggtgagctgctgcgtgttctgaagatactagatcaggctttagagccgcgaacgttc
ctggtcggagagagcttgtctctggccgacgtggcggtcgtgactgctgtgctgctgcct
tttaaatatgtcttggagcctccaaagaggaagtcactggtgaacgtgagcaggtggttt
gatacttgcgtgaaccagcctcagttccagaaggtgttgggtaaaatctctctctgtgag
aaaatggtgcctgtgacgcctaaacctaaccctgcttccaccgatgctgctgggaacact
ggcactgctaacggcgatacacctaagacagaagcccagctgaaaaaagaggccaaaaag
cgtgaaaagatggagaagttccagcaaaagaaagagatggaggagaagaagaagcagatg
cagtctcagtctgagaaaaaagccaaaccggaaaagaaggaactgggtgtgatcacgtac
aacatcaagactccagaaggggagaaaaaagatgtgctgagccctctgccggactcgtac
agtcctcagtacgtggaagcagcctggtacccctggtgggagaaacagggtttcttcaaa
cctgaatatggccggaagagcatcagtgaagtgaaccctcgtgggacttttatgatatgc
atccctcctcccaatgtgaccggctctcttcatttgggtcatgcgttaaccaacgccatc
caggactgcctcaccagatggcacaggatgaaaggcgagaccacgctgtggaacccgggc
tgtgatcacgctggcattgccactcaggtggtggtggagaagaaactgatgagggagaga
ggcatgaccagacatgacctcggccgagagaagttcatcgaagaggtctggaagtggaaa
gatgaaaagggtgatcgtatctaccaccagctgaagaaacttggctcttccctggactgg
gaccgagcatgtttcactatggatcctaaactatcctacgctgttcaggagtcgtttatc
cgtatgcacgaggagggggtgatctacaggagcaagagactggtcaactggtcctgcacc
ctcaactctgccatctccgatatagaggtggataagaaagagctgacgggcagaactatg
ctttcggtgccaggctataaggagaaggtggagttcggagtgctggtgtcattctcctac
aagatcgagggatcagatgaggaggtggttgtagcgactacacgtatcgagaccatgttg
ggtgatacaggtgtggctgtgcatcctaaagattccagatatacgcacctaaaaggaaag
gtggcgattcacccattctgtaaccgtaagcttcccatcgtgttcgacgactttgtggac
atggagtttggaacaggtgcggtgaagatcacacctgctcatgaccacaacgactacgaa
gtgggcgtgagacacaatttgcccttcgtcaacatcctggatgagaatggtgtactcgtc
aatgtgccttctccattcctgggcatgaagcgtttcgaggcgaggaaaatggtgctccaa
gccctgaaggaaaaaggccagtttaaggagatcaaagataatcccatggtggtgccgatg
tgcagccgctctaaggacattgtcgagcctttcctgaagccgcagtggtatgttgcctgc
gcggagatggggaggcaggcggccgaagtcgtcaggagcggagagctgaagatcatccca
gaccaccacctcaaaacctggtttaactggatggataacatcagggattggtgtatctct
cgtcagctctggtggggtcacaggatcccagcgtatttcgtcacagtgaacgatccttca
gtgaaaccaggggaggatgtagacggtcattactgggtcagtggaaggtcagaggaagaa
gctcgggaaaaagctgcgaagcgcttcaacgtcaccgtggacaaaatctccctccgccaa
gatgaggacgtcttggatacctggtattcctctggaatctttcccttttccatctttgga
tggccaaatgacaacgaggacctgagagtgttctatccaggcactcttttggagacggga
cacgacatcctgttcttttgggtggctcgcatggtcatgatggggctcaaactcacaggc
aaacttccttttaaagaggtgtacctgcacgctgtggtgagggacgctcacggaagaaag
atgagcaagtctctgggaaacgtcattgatcctctggatgtcatcactggaatctcactg
gagggtctccatgagcagctgaaggacagcaatctggaccctctggagatcgagagggct
aaacagggacagaaatctgattaccccaatggaattcccgagtgtggaactgatgctctg
aggtttgctctgtgcgcctacaccagccaaggacgggacataaacctggacgtgaacagg
atcctgggctacaggcatttctgcaacaagctgtggaacgctgttaagtttgccataaag
acgctgggggagggcttcgtgccgtgggagaaagctcagctgtccggcagcgagggtgtg
tccgataagtggattttgtctcgcctcagcgccgctgtggccctctgtgaaaatggattc
caggcctatgatttcccagccatcaccacatccatctacaacttctggctctacgaactg
tgtgatgtttacctggaaagcgtgaaacctgtgataagcagaacagatgcagaaggcaaa
aagcaagcagacatttgcaggcagactctctacacctgtctggatgtggggctccgcctc
ctgtctcccattatgcccttcgtcacagaagagctcttccaaaggttgccaaggaggcgg
tctaaggacagcccccccagcatctctgtcaccccctacccagaaacctcagagttttgc
tggcacagcgaggaactcgaccagcagatggagtttgtgatgaccgtggtcagaaccatt
agatcactcagggccgactacaacctgaccaagacccgcccggactgttacctgcagtgc
atcgactctgccacggcatctctggtgaagaaatacagtctgcagatccagactctgtcc
tactctcaggctatccacctggtcatcgggaacgaacaggcaatcccagagggctgtgcg
gtggccatcgcttcagacaaatgcaccatccatctcgtgctgaagggctcgattgatgtg
gaaaaggaggtggtcaagctgacgacgaagaaggccgagctggagaaacagatggagaaa
ttgcaggagaaaatgaagaagagcgactacaaagagaaagttccagcgaaggttcaagag
caggatgccgagaagctgaggcagaatcagaccgagctgcagaaagtgacagaagctata
cagaacttcaggaagatgatgtaa
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