Clarias gariepinus (North African catfish): 128520219
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Entry
128520219 CDS
T10780
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128520219 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgar01009
]
128520219 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128520219 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
cgar03029
]
128520219 (rb1cc1)
Protein phosphatases and associated proteins [BR:
cgar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128520219 (rb1cc1)
Membrane trafficking [BR:
cgar04131
]
Autophagy
Autophagosome formation proteins
ULK complex
128520219 (rb1cc1)
Mitochondrial biogenesis [BR:
cgar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
128520219 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF6950
Motif
Other DBs
NCBI-GeneID:
128520219
NCBI-ProteinID:
XP_053350323
LinkDB
All DBs
Position
4:complement(3484840..3505002)
Genome browser
AA seq
1577 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMEMKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTTSYQKLLSKFDMAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKSSSPRPRSDDGDGGQTGSTEV
QRSQKSPVESADQDRARSSGLQEALLEEDEDEEDPDKTDAPSFNVTLLDWINVQDRPNDV
EAVVRKCFDSINRLDPRIIQPFLVECRDTITKLDNQNMKAIKGLEDRLYALDQMIASCKK
LVNEQKELAQGFLANQMRAENLKDNSVLPDLCLSHANQLMIMLTNHRKLLDIKQKCTTAK
QELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERVRVVEALSTVPQMYCLAVV
EVVRRKMFIKHYREWASALVKDGKNLYEAEKAKRETFGKLFRKSFLRNRLFRGLDSWPPS
SFCTRKPRRFDFELPDISLNDLQYLKSCCPAEVQPFLRVPSLCDFEPLNHHTEALHHLVQ
AARSVDEMSQTITDLLSELKVSGSQSTQRPSSECRTETTPTCSKTPPPLSILTPPTQPRS
LPAALEDLSPDSIDAHTFDFETIGHPNMDPVLQQGSLDLDSLAESPESDFMSAVNEFVIE
ENVTSPNPISDPTSPEMMVESLYSSVINAIDSKRIQDTTMLEKENSRIMTLRLTVDRYRS
AAEESQSNMRKVKDDLCHFQGLVLKEQRDFGFALKKMSTEIHAVVNNIKRRQEEELEEEH
QKELQQLKDDHEKHVLRLNDELEGNHKIVRDVQRAMLNLEGLVERKEKELAQMEGERERS
LQETRNIHQLAIQELDKKLSEQSKALQEVLHSRDALASQLDGLQAEVEKKVRQEMERAEK
NHLQELEARLRKDHQVELEVMKSENLSALDSLGVEHQAKLKELAESHLIERKEYECRCKD
YEARVSELADTRCKLEMEMALKETETEDLRLQYEDAKTQHEDALKAEMDSRTQAHQQQVE
VLQQQLQKKNEEYEQGLAELRALMRLEKDHCISELVERHDEESTLLRHEFSALKQKSQDA
EKDCEERLQEIQRQLEDQLKTLSEEREEEQRAFRDKERDLESAISDLQAVNSLLSGQLEQ
ERQEARRALKEGEEAEAVKDALMQKEELEARLLGKINLLETQLEERRSTDKGAEAGGGDI
TLQQRLDEERASLLGKLELLEKKKNEELQNLKTSLIAEQQTNFNTVLTREKLKKEQIISD
LSEKLKKVLLQQEKDKSLIETLSEDRASILQEKKHLEEELNRLRSSALVSSTFFVPNPIA
VAVETAGAYGGAGPAELTTRAALDSERLGSVAALRDDDRVDSAVDASMMTVHDNAAMLSE
EKQRILMLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDER
HDNYVLFTVGPTLYFLHSESLTALDLKPATGATRRPWVLGKVMEKEYCQAKKAQNRFKVP
LGTKFYRVKAVPWNKRV
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtacgtgttccaggtcaataacgggagcacgttgacgtttgacacagagcta
gccgtacaaaccgttctggacctcaaacatgcgatccaggccaagtacaagatcgccact
cagcatcaggtgctggtggtcaacggtggcgagtgtatggtggccgagaggagggtgtgt
agctacagcgcgggcacggatacgaaccccatcttcttgttcaacaaagagatgatcctg
tgtgaccgagcgccgaccatccccaaaaccaccttctccatagagaacgagatggagatg
aaggtggaggagtccctcatgatgcctgcggtgtttcacaccgtcgcctcgcggacgcag
ctcgccgtggaaatgtttgaagtggccaagaagttgtgttccttctgtgaacgcctggtc
catgacgagcacctccagcaccagggctgggccgccatcatggccaacctggacgactgc
accacctcctaccagaagctgctctcgaaatttgacatggcctacactaattaccaacaa
gattttgaggacatcaagctcaagttgacaaagctcgggactgccgtctcggtcatggcg
aagatccctcttctggagtgcctgacccgccacagctacagagagagcttggagaagtcc
tcctccccccgccccaggtctgacgacggagacggaggccagacgggttctacggaggtc
cagaggagccagaagtctcctgtagaatcggcggatcaggacagagcgcggagcagcggg
ctgcaggaggcgctgctggaggaggatgaggatgaggaagaccctgataaaacggacgcg
ccttcgtttaacgtcacgctgctggactggatcaacgtgcaggaccgacccaacgacgtc
gaggccgtagtgaggaagtgcttcgattccatcaacagactcgatccacggattatccag
ccgttcctcgtagagtgccgggacacgatcaccaaactggataatcagaacatgaaggcc
ataaagggactcgaagacagactgtatgcactcgaccaaatgatcgccagctgcaagaag
ctagtcaatgaacagaaggagctcgctcagggatttttagccaatcagatgagggctgaa
aacctgaaggacaactcggtgctgccggacctgtgtctgagtcatgccaaccagctgatg
atcatgctgaccaaccacaggaagctgctggacattaagcagaagtgcacgactgccaaa
caggaactggccaacaacctgcaagttcgtctcaaatggtgctgctacgtgatgctgcat
gcggaccaggatggcgaaaagctgcaagcgctgctgcgcctcctgaccgagctgctggag
cgagtgcgtgtggtcgaggccctcagtaccgtcccacagatgtactgcctggccgtggtc
gaggttgtgcgccgtaaaatgttcattaaacactacagagagtgggccagtgctctggtg
aaagatgggaagaacctctatgaggccgagaaggccaaacgcgagacatttggcaagctg
ttcaggaagtcgttcctcaggaatcgcttgttccgaggactcgactcatggcctccttcg
tcgttttgcacaagaaagcctcgcaggttcgactttgagcttccggacatttccctgaac
gacctgcagtatctgaagagctgctgtccggctgaagtgcaaccttttctcagggttcca
tcactatgtgattttgagccattaaaccatcatacagaagctcttcaccacctagtacaa
gcagcccggagtgtagacgagatgtctcaaaccatcacagacctactgagcgaactgaag
gtgtctggaagccagagtacacagagacccagctctgaatgcagaacagagaccaccccc
acctgttctaaaaccccacccccgctgagtatactgactccacccactcagccgcgctcc
cttcccgctgcattagaagacctgtcccctgacagcattgacgcccatacgtttgacttc
gaaaccataggacatcccaacatggaccctgtgctccagcaaggctctctggacctggac
tctttagccgagagcccggagtcggacttcatgtcggcggtcaacgagttcgtcattgaa
gagaacgttacctcacccaatcctattagtgaccccacgagtcctgagatgatggtcgag
tctctctactcatccgtcatcaacgctatagacagcaagaggatccaggacacgaccatg
ctcgagaaagagaactctagaatcatgaccctcaggctgaccgtggaccggtaccggtcg
gctgccgaggagtcgcagagcaacatgagaaaagtcaaggacgacctctgtcacttccaa
ggactcgtcctgaaagaacagcgcgacttcggcttcgccttgaagaagatgagcacggaa
attcacgcagtagtcaacaacattaaacggcgtcaggaagaagagcttgaggaggaacac
cagaaagagctccaacagctgaaagacgaccacgaaaagcatgtcctcaggcttaacgac
gagctggaagggaatcacaagatcgtccgggacgttcagagggccatgctcaacctcgaa
ggactcgtggagaggaaggagaaagagctggctcagatggagggcgagagggagcgctca
ctgcaggagacgcgcaacatccaccagttggccatccaggaattggacaagaaactgtct
gagcagagcaaggcgcttcaagaagtcctgcactccagagatgctctcgccagccagttg
gacggcctgcaagccgaggtcgagaagaaggtacgccaggaaatggagcgcgccgagaag
aaccatctccaagagttggaggctcgtctcagaaaagatcaccaggtggaattggaggtc
atgaaaagcgaaaacctaagtgctctagacagcttgggcgtcgagcaccaagccaagctg
aaggaactcgcggaatcgcacttgatcgagcggaaggaatacgagtgccggtgtaaggac
tacgaggcacgtgtgagtgagctcgccgacacccgctgcaaactagaaatggaaatggcg
cttaaggagaccgaaacggaagatctccgcttgcagtatgaagatgccaagacccagcac
gaggacgcacttaaggccgagatggactcccgaacacaggcgcaccagcagcaggttgag
gtgttgcagcagcagctccagaagaagaacgaggagtacgagcaaggccttgccgagctg
cgcgcgctcatgcgccttgagaaggaccactgcatctcggagctggtagagcggcacgat
gaggagagcacgctgctgcgccacgagttctccgcgctcaagcagaagtctcaagatgcc
gagaaggactgcgaggaacgcctacaggagatccagcgccagctggaggaccagcttaaa
accttaagcgaggaacgggaagaggagcagagggcgttcagggacaaagagcgcgacctg
gagagcgcaatcagcgacctgcaggctgtgaactcgcttctgtcggggcagctggagcag
gagcgtcaggaggcccgcagagcgctgaaggagggtgaggaggcggaggcggtgaaggac
gccttgatgcagaaggaggagctggaagcgagactattagggaaaattaacctacttgaa
acgcaactcgaagaaagacgatccactgacaaaggagctgaggctggaggtggggacatc
acgctgcagcagaggctggacgaggaaagagcgtccctactgggcaagctggagctgctg
gagaagaagaagaacgaggagctgcaaaacctgaaaacctcgctgatcgctgagcagcag
acgaattttaacactgttctcacgagggagaagttaaagaaggagcagatcatcagcgac
ctgagcgaaaaactgaagaaggtgttgctgcagcaggagaaggataagagtttgatcgag
accctgtctgaggaccgcgcctccatcctgcaggagaagaaacacctagaggaggagctc
aaccgtctaaggagctccgccctcgtctcctccactttttttgtgcccaatcccatcgct
gttgccgtagagacggccggagcctacggtggggccggtcctgccgaactcaccacccgg
gctgcgctggattcggagaggctggggtccgtggccgcgctgcgagatgacgatcgggtg
gactctgctgtcgacgccagcatgatgaccgtccacgataacgcagcaatgctatcggag
gagaagcagcggatactgatgttggaacgaacgctgcacatgaaagaggaggagaacaag
aggctcagccaaagactgatgtcccagagcatgtcctctgtgtcctcacggcactcggag
aaaatcgccattcgagatttccaggttggtgatttggtcctgataatcctggacgagcgg
cacgataattacgtactgttcacggtcggccccactctctacttcctgcactcagaatct
ctcactgcgctggacctcaagccggccactggcgcgacgaggcgaccctgggtccttggg
aaggtcatggagaaggaatattgccaggcgaaaaaggcccaaaaccgctttaaagttcct
ctgggcaccaaattctaccgcgtaaaagccgtgccgtggaacaagagggtgtaa
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integrated database retrieval system
