Clarias gariepinus (North African catfish): 128520224
Help
Entry
128520224 CDS
T10780
Symbol
vim
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128520224 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128520224 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cgar04812
]
128520224 (vim)
04147 Exosome [BR:
cgar04147
]
128520224 (vim)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
128520224 (vim)
Cytoskeleton proteins [BR:
cgar04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
128520224 (vim)
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128520224 (vim)
Exosomal proteins of other cancer cells
128520224 (vim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
DUF7491
CCDC39
TPR_MLP1_2
TolA_bind_tri
FKBP15
BLOC1_2
DUF4515
BRE1
Motif
Other DBs
NCBI-GeneID:
128520224
NCBI-ProteinID:
XP_053350343
LinkDB
All DBs
Position
4:21747734..21752668
Genome browser
AA seq
457 aa
AA seq
DB search
MANRTSASSRQSSSYTRIFGGDRNASSRSSYSSRQYSAPARAPRLSYNAFSAPSITASKS
VRVRSANLPRLTSDTLDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQN
KMLSTELAQLRGKGTSRVGDLYEDEMRDLRHQVDHLTSDKARVELDRDNLAEDIERLREK
LQEEVLQREDAENNLQGFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIAELQVQ
IQDQHVQIDMDIAKPDLTSALRDVRLQYETLASKNIHEAEEWYKSKFADLSEAAARNTEA
IRQAKQDANEYRRQVQALTCEVDALKGTNESLERQMGELEDNFAMESSSYQDNIIRLEEE
IRSMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPNFSSFNLRESMT
EAKPLMENLSKKVLIKTIETRDGNVINESTQHHEDLE
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccgaacctcggcaagttcccgccagtcatcttcttacacaaggatattcggc
ggtgaccgtaatgcctcctcgcgctccagctactcaagccgccagtactcggctccggcg
cgcgccccacgtctctcctacaacgcgttctccgctccgtctatcaccgcgagcaaaagt
gtgcgagtgcggagcgccaacctgccccgactcacatccgacacgctggacttcgccctg
tccgatgccatcaacagcgagttcaaagcgaaccgcactaacgagaaagccgagatgcag
catctgaacgaccgcttcgccagctacatagagaaggtgcgctttctggagcagcagaac
aagatgctgagcaccgagctggcgcagctcagaggcaaaggcacgtcccgagtcggagat
ctttacgaggacgagatgagggatttacgccatcaagtcgaccatctgaccagtgacaag
gccagggtggaactggatcgagataatctggcggaagatattgaacgccttagagaaaag
cttcaagaagaggttcttcaaagggaggatgctgaaaacaacctccaaggtttcaggcag
gatgttgataatgcatccctggctcgtctagacttggagcgcaaggtggagtccctacaa
gaggagatcgctttccttaagaaacttcacgatgaggagattgctgagctgcaggtccag
atacaagatcagcatgtgcaaattgatatggacatagctaagcctgatctgacctctgca
ctgagggatgtccggcttcagtatgagactctggccagcaagaacattcatgaggctgag
gaatggtacaaatccaagtttgcagatttgtcagaggctgctgcacgtaacactgaagcc
attcgccaggccaaacaggatgccaatgagtatcgccgccaggtgcaggctttaacctgt
gaggtggatgcgcttaagggcactaatgagtcactggagcgccaaatgggggaactggag
gacaactttgccatggagtcgtctagttaccaggataacatcatccgcctggaagaagaa
attcgcagcatgaaagatgagatggctcgtcatttgcgtgagtaccaggacctgctgaac
gtcaaaatggccctggacattgaaattgctacctacaggaaactgctggagggagaggaa
agcagaatcaccacaccactgcccaatttctcctcatttaatctgagagaatccatgaca
gaagccaaaccactcatggagaacctgtcgaagaaagtgttaattaagactatagaaaca
agagatggtaatgtgataaatgagtccacgcagcaccacgaagacctggaatga
DBGET
integrated database retrieval system
