Clarias gariepinus (North African catfish): 128520280
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Entry
128520280 CDS
T10780
Symbol
snx27b
Name
(RefSeq) sorting nexin-27b isoform X1
KO
K17936
sorting nexin-27
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128520280 (snx27b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cgar04990
]
128520280 (snx27b)
Membrane trafficking [BR:
cgar04131
]
Protein recycling
Others
Others
128520280 (snx27b)
Domain-containing proteins not elsewhere classified [BR:
cgar04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
128520280 (snx27b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
SNX17-31_F2_FERM
PDZ_2
SNX17_FERM_C
USP7_C2
VirE3
DarA_N
RA_3
Motif
Other DBs
NCBI-GeneID:
128520280
NCBI-ProteinID:
XP_053350424
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Position
4:complement(9502827..9531712)
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AA seq
556 aa
AA seq
DB search
MADVVEGEDVRSVVPSALRSSRHGSGGNVTAGPRLVRIIKSDSGYGFNVRGQVSEGGQLR
SINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVNVEGATHKQVVDLIRAGEREL
VLAVLSVPQPETDSLDPGDDGSSQSCYDYSDKQAVPISVPTYKHVEQNSEKFVVYNVYMA
GRQLCSKRYREFAILHQNLKREFATFTFPKLPGKWPFSLSEQQLDARRRGLEEYLERVCS
VRVIGESDIMQEFLSESDENYNGVSDVELRIAMPDKTTVTVRVRKNCTTDQVYQAVVIKV
GMDSITASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTLRKWLFTTEEEI
LLNDNELAINYCFHQALDDVKRGFIKAEEKSYQLQKLAEQRKVSMYLSMVRSCEGYNEII
FPHCACDSRRKGHVITAISIRHFKLHACTEEGTLENQVIAFEWAEMQRWDTDEEGMAFCF
EYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEVEEEATDKDNKNCSKDEYLPAV
EAQKGWRHLRQEIVTP
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgtagtggagggagaggatgtgcgctcggttgtgccctcagctctgcgctcg
tcacggcacggctccggcgggaacgttaccgcgggcccgcggctcgtccgcatcatcaag
tcggactcgggctacggcttcaacgtccgcggacaggtgagcgaaggaggccagctgcgg
agcatcaacggtgagctgtacgcgccgctgcagcatgtcagcgccgtgctcccgggcggt
gcagcggacagagccggcatctccaagggcgaccgcatcctcgaagtgaatggtgtaaat
gtggaaggagccacacacaaacaagttgtggatctgatccgagctggagaaagggaactc
gtcctcgccgtcctttcagtcccccaaccagagacagacagcctggacccaggagacgat
ggctcgtcccagtcttgctatgactacagtgacaagcaggctgtacccatctctgtgccc
acctataaacacgtggagcagaatagcgagaagtttgtggtgtataatgtgtatatggcc
ggcagacagctctgctctaaacgctacagggagtttgctatcctgcatcaaaaccttaag
agggagtttgctaccttcacgttccctaaactgcctgggaaatggcccttctctctgtcc
gagcagcagctggacgcccgaaggagggggcttgaggaataccttgaaagagtgtgttct
gtgcgagtcattggtgagagcgatataatgcaggaattcttgtcggaatcagatgagaac
tataacggtgtctctgatgtggagttgaggatagccatgccagataaaaccacagtaacc
gtccgagttcggaagaactgcactacagaccaggtgtaccaggctgtggtgataaaggtt
gggatggacagtattaccgccagttattttgctctcttcgaagttattaatcattcattt
gtgcggaagttggcgccgaacgagtttcctcataagctctacgtgcagaattacacgtcg
gccgttcccgggacctgcctcaccctgcgcaagtggctcttcaccaccgaggaggagatt
ctcctgaacgacaacgagctcgccatcaactactgctttcaccaggccctggatgatgtg
aagagggggtttattaaagcagaggagaaatcataccagctccagaaactggctgaacag
aggaaggtttccatgtacctgagtatggtgaggtcatgcgaaggctacaatgagatcatc
tttcctcactgtgcttgtgactcacgccgcaagggtcacgtcatcacagccattagcatc
cgacacttcaaactgcacgcctgcactgaagagggcactctggagaatcaggtgatagcg
tttgaatgggctgagatgcagaggtgggacactgacgaggagggaatggctttctgcttc
gagtacgcacgaggcgagaagaagccacgctgggtcaaaatcttcactccatactttaac
tacatgcacgagtgcttcgagcgggtcttctgtgagctcaaatggcgaaaagaggtcgaa
gaggaagcgacggacaaggacaataagaactgtagtaaagatgaatatcttccagctgtt
gaggcacagaagggatggaggcacctgagacaggagatcgtcactccctga
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