Clarias gariepinus (North African catfish): 128520459
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Entry
128520459 CDS
T10780
Symbol
col14a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgar00535
]
128520459 (col14a1a)
Proteoglycans [BR:
cgar00535
]
Extracellular matrix (ECM) proteoglycans
Others
128520459 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_Dep-1_2nd
FN3_Tor_3rd
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
128520459
NCBI-ProteinID:
XP_053350683
LinkDB
All DBs
Position
4:14725986..14821258
Genome browser
AA seq
1862 aa
AA seq
DB search
MQVDRLRMTAWWPLIFLALMQFPEHTKGQIAGPRKLRFKVIGPDKLHVLWKEPKGEYDGY
RFIYTSLPDGERNELRIEKGQAKAIINDFNPAKKYTVKVIAVSGSQQSRALEGSFAAQAQ
ESDKENTQPQRIKEISTEDGIKLSEVDQFVCTTSAIADIVILVDGSWSIGRLNFRLVRTF
LENLVNAFDVGINKTRIGLAQYSGDPRIEWHLNAFTTKDAVIDAVKNLPYKGGNTLTGLA
LKYILKNSFKPESGSRSNVPKIGILITDGKSQDAVEVPAQSLKDAGVEVFAIGVKNADEN
ELKIISSQPHDTHTYNVADFSIMNTIVEGLTKTVCNGVKLQDKEIKKDSVPEDTPNAPQN
LVTSEVTARSFRVSWTHAPGSVLKYRVIYYPNKGGQPEEVVVGGTETSAVLKDLSSLTEY
EIAVFAVYTSSASEALRGRETTLALPVVKGLELYDVTHSTMHARWRSAEGASGYMLVYAP
MSSETADETEVKVADTVTDFRLVGLSPDTDYTVTVYAMFGDEASDPATVQETTLALTAPR
NLRVTEVDHNSVRLNWDTPSSTVKGYRLEYVKSNGAETNEVEIGPVSNVYLRNLASQTEY
AVSVFAVYNGDQSEPLKGVFTTKLVPAPRTIRIDEVTPNSFRVSWTQPGDGVELYKLAWR
PFGGGGDTKEVIVPGSMKTYVVNDLSPLTEYEVLLSAVYRDEAESSAVPALETTLPMPTT
TAYPTTTPPVKRLGVTNLLVDDETTYSLQVSWDMDDADIKQYRVTYVSQKGDRAEESVLV
PGDSKTVMLQPLLSDTEYTITVNPVYPEGEVSVLSMSSIGHTLPLTAPSNLRVSEEWYNR
FRLTWDTPASPTMGYRIIYQPTSVPGHALETFVGDDVNTLLILNLLSGTEYGVKVISSYT
TGSSDPLIGTARTLFLGVSGLSTYQVQLNSMCVQWQPVSQASLYRVIIESLLNGHREEHS
VSGGAFRQCFFNLSPNTQYKISVYTQLQSMEGPAVTITDTTLSAPTQLPTPPPTTAPIPT
IPSAKEVCKAARAELVFLVDGSWSIGDDNFQKIIRFLYSTTGALDIIGPEGTQVAIVQFS
DDARTEFKLSSYRDKESLLDAVQRITYKGGNTKTGRAIKHVKESIFTDEAGARRGIPKVL
TVLTDGRSQDDVNKISKDLQMEGYIIFAIGFADADYGELVNIASKPSEKHVFFVDDLDAV
NKIEEQLITFVCEAATATCPSVLMSGNTLAGFRMMEMFGLVEKAYSNVQGVSMEPGTFNS
FPCYRLHRDALISQPTKYLHPEGLPSDYTVSVLFRILPDTPQEAFALWEILNKANEPLVG
LILDNGGKTLTFFNYDYKGDFQTVTFEGPDIRKIFYGSFHKLHMAISKTSAKVVIDCKIV
GEKPISAAGNITTDGTEVLGRMVRSRGSKDNSASFQLQMFDIVCSTSWASRDKCCELPGL
RVEKDCPALPHACTCSQDSKGPPGPSGPPGGPGIRGSRGDRGEPGSVGPQGPPGEIGPPG
PQGPPGPQGPSGLSIQGPPGSAGGKGEKGDAGLPGPQGVPGASGGPGRDGPPGQRGLPGK
IGPQGQQGPPGPIGSPGAPGAPGTKGPPGPHGDHGTPGPPGTKGERGERGDMQSQAVVRS
IARQVCEQLIQSHLSRYNSILNQIPSQSVSVRTVPGPPGEPGRQGPAGPQGEQGPPGRPG
FPGVNGLSGRPGERGLPGEKGEKGSPGVGTQGPRGLPGPPGPPGEGRTGSQGPPGRPGPQ
GTPGRPGSPGNSGPAGPPGYCDQNACLGYNIGVQQLPSSSYQNYGPTDTNDEEEEEEDPY
GGHHRYPPQYYQPSYPNPRVAQPGTGYPGAMMREXGMQRFSRSVTESNGAQTTTQEEDKL
AH
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtagacaggctgagaatgaccgcgtggtggccgctaatcttcctggcactgatg
cagtttccagaacacacaaaggggcaaattgcaggcccacgaaaactgagatttaaagtc
ataggtcctgacaagttgcacgtcctgtggaaagagccaaaaggagaatacgatggctat
agatttatttacacaagtttgccagatggagagaggaatgagcttcgaattgaaaaaggt
caagcaaaggcaataataaatgacttcaatccagcgaagaagtacacagtcaaggttata
gctgtgagtggaagtcagcaaagcagagcacttgaaggaagctttgcagctcaggctcag
gaatctgacaaagaaaacacgcaaccacagagaataaaggagatttccacagaggacggt
attaaactatcggaagtcgatcagttcgtctgcaccacatctgcgattgctgatattgtc
atcctggtagatggctcgtggagcattggcaggctcaatttccgtttggtccgcacgttc
ctggaaaacctggttaatgcttttgatgtgggaattaataaaacccgtataggacttgcc
cagtacagtggagatcccaggattgagtggcacctgaatgcctttaccactaaagatgct
gtcattgatgctgtcaaaaacctgccatacaaaggaggaaacacgctcacaggtttggcc
cttaaatacattctgaagaacagcttcaaaccagaatctggatctcgaagcaacgtccct
aaaattgggatcctgatcaccgacggaaaatctcaggatgctgttgaggttcctgcccag
agcttaaaggatgctggggttgaggtctttgccattggggtaaagaacgcagatgaaaat
gagctaaagataatttcctcacagccgcatgatacacacacctacaatgtggccgacttc
agcataatgaatactattgtggagggtctgactaagactgtgtgcaatggtgtaaagctg
caagacaaagagatcaaaaaagattcagtccctgaagacacaccaaacgctcctcagaac
ttggtgacatctgaagtgacagcaaggagtttccgtgtgtcctggacccacgcaccaggc
agtgttctgaagtatcgtgtgatttactatcctaacaaaggaggtcagccagaagaagtt
gtggtgggtggcacagagacctcagcagtcctgaaagacctgagctccctgactgagtat
gagatcgctgtgtttgctgtttacacctcctcggccagtgaggctcttaggggcagggag
accacactggctctgcctgtggtcaaaggtctggagctgtatgatgtgacacacagcacc
atgcatgctcgatggagatctgcagaaggggcttctgggtacatgcttgtgtatgcaccc
atgagcagtgaaactgctgatgaaaccgaggtcaaagtagcagacactgtgacagacttt
aggctggtgggtttaagcccggatacagactacacagtgacagtctatgccatgtttgga
gatgaggccagcgatcctgctactgtgcaggagaccaccttggctctgacggctcctcgt
aatcttcgtgtcactgaggtggaccacaactctgtgcggcttaactgggatacaccgtcg
agcacagtcaaagggtatcgactggagtacgtcaaaagtaatggtgcagaaactaacgag
gttgaaatcggtccagtttctaacgtgtacctaagaaacctggcctcccaaaccgagtat
gcagtgtctgtgtttgcagtgtacaatggggatcagtcagaacccctaaagggtgtcttc
actacaaaactcgttccagctccacggaccattaggatcgatgaggtgactccgaatagt
tttcgagtcagctggacacaaccaggggatggcgtggaactttataaactcgcctggaga
cccttcggaggaggaggagacactaaagaggtgattgtaccgggcagcatgaaaacctac
gtggtaaatgatctttctcctcttactgagtatgaagtgctcctgtccgctgtctacaga
gatgaggctgagagcagtgctgtacctgcattagagaccacattacccatgcctactacc
acagcctaccccactacaactccaccagtgaagaggctgggggtgaccaacctgctagtg
gacgatgagaccacttacagtctgcaagtcagctgggacatggatgatgcagatattaag
cagtacagagtgacctatgttagccaaaaaggggaccgtgcggaagagtcggtgctggtc
ccaggtgatagtaagaccgtgatgttgcagcctcttctctcagacacagaatacacaatc
acggttaaccctgtttatccggagggagaagtcagcgtgctctctatgtcctctattggc
catactttaccactgactgcaccgagcaacctgagggtgtctgaggaatggtacaaccgc
ttccgcctcacctgggacacacctgcctcacccaccatgggctacagaatcatctatcag
cctacatctgtgcctggccatgctctggagacgtttgtcggagacgatgtgaacacactg
ctgattctgaatctgctgagcggcacggaatatggggtcaaggtcatttcttcatacaca
acaggctccagtgaccctctcatcggcacagctaggacactgtttctaggagtcagtggg
ctcagtacataccaggtgcagttgaacagcatgtgtgtacaatggcagcctgtcagccag
gcctccctctacagggtcatcatcgagtcgctgctcaatggtcacagagaggagcacagc
gtaagtggtggtgccttcaggcagtgtttcttcaacctgtcgcctaacacgcagtacaag
atcagcgtctacacacagctacagagcatggagggccctgccgtcaccataacggacacc
acactttcagctccaacccagctgccgactccacctcccaccactgccccgattcccacc
attccatcagctaaagaagtttgtaaagcagccagagcagagttggtgttcttggtagat
ggctcctggagcataggagatgacaactttcagaagatcatccgcttcctatacagcacc
acgggcgcgctggatatcattggtcctgaaggaacacaggtggccattgttcagttcagt
gatgatgccaggaccgagttcaagctcagctcctacagggacaaggagtctctgctagat
gccgtgcagcgcatcacctataagggaggaaacaccaaaacaggtcgagccattaagcat
gtgaaggagagcatctttacggacgaggctggtgcgagaagaggaattcccaaagtcctc
acggtgctcacagatggccgctcacaggacgacgttaacaagatctccaaagacctgcag
atggagggttacatcatttttgccattggctttgctgacgcagattacggggagctggtg
aacattgcaagcaagcccagcgagaaacatgtcttctttgtagatgatctggatgcagtc
aataaaatcgaggagcagctcataacatttgtgtgtgaggcagcaacagccacttgtcca
tctgtactgatgagtgggaataccttagcaggtttccgtatgatggagatgtttgggctg
gtggagaaggcctacagtaatgtgcagggtgtttccatggagcctggaactttcaacagc
ttcccctgctacaggctgcatagggatgcgcttatctcacagccgaccaaatatctgcac
cctgagggactcccttccgactacactgtgtcagtgctgttccgaatcctgccagatact
cctcaggaggcatttgcattgtgggaaattctcaataaagccaatgaacccctggtgggt
ctcatcctggacaatggtgggaaaacgctgacattctttaactatgactacaagggtgat
ttccagacggtgacctttgaaggacctgacatcagaaaaatcttttacggcagttttcac
aagcttcacatggccatcagcaagacctctgccaaggtagtaatcgactgtaaaatagtg
ggtgagaagcccataagtgctgctgggaatatcaccacagatggaacggaggttctgggt
cgaatggtgcgctcacgcggcagcaaggacaactcagcatcgtttcagcttcagatgttt
gatattgtctgcagtacatcatgggccagtcgggataaatgctgtgagctcccaggcttg
cgagtagagaaagactgtccagctctgcctcatgcatgcacctgctctcaagacagtaaa
ggacccccgggaccctctggacctccaggtggtcctggtatacgaggttcaagaggtgac
cgaggggaaccaggctcagtgggacctcaaggaccacccggtgaaattggacctccagga
cctcaggggcctccaggaccacaaggaccaagtggactctctatccagggacctccagga
tccgccggaggaaaaggagaaaaaggtgacgcgggtctgccaggtcctcagggtgtgcca
ggagcaagtggaggtcctggcagagacggccccccaggacagaggggtttgcctgggaaa
attggaccacagggacaacaggggccaccaggacctattggcagcccaggtgctcccgga
gctccaggaaccaaaggacccccaggaccacatggtgatcacggaacacctggtcctcct
ggtaccaaaggcgagcgaggggagaggggtgacatgcagtctcaggcagttgtccgttct
atagcccgacaagtgtgtgaacagttaattcagagccacttgtctcgctacaactcaatc
ctgaatcagatccccagtcagtctgtgtcagtccggacagtgccaggtcctccaggagag
ccaggccgtcagggccctgcagggccacagggagagcaagggcctccaggtagaccaggc
ttccccggagttaacggactgagcggccgtccaggagagagaggactcccaggagagaaa
ggagagaaaggcagtccaggtgtggggacacagggaccccggggcctcccaggaccgcca
ggtcctccaggtgagggccggacaggaagccagggacctccaggcaggcctggacctcag
ggcactccggggcgcccaggaagtcctggcaactctggtccagctggaccaccaggttac
tgcgaccagaacgcctgcctagggtataacataggagtacaacagttaccttccagttcc
taccaaaactacgggcccactgacactaatgatgaagaagaggaggaagaggacccgtat
ggcggacaccaccgctacccaccccagtactaccagcccagctatcccaaccctcgtgtt
gcccagcctggcaccggttatcccggtgccatgatgagggagtgaggcatgcagcgcttc
tcccgcagtgtgactgagagcaatggagctcagaccacaacacaggaggaggacaaactt
gcacactga
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