Clarias gariepinus (North African catfish): 128520808
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Entry
128520808 CDS
T10780
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128520808 (trpc1)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128520808 (trpc1)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
128520808
NCBI-ProteinID:
XP_053351188
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Position
4:37235569..37273128
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AA seq
799 aa
AA seq
DB search
MRLGLGVLSYPLPVLMAALYRGPHAASPRAHLALKDVREVQEETTLDEKLFLLACEKGDY
YMVKKLLEEKRNGELNINCVDVLGKDAITIAIENENLDILQLLLDHGCQTTDALLVAIDS
EVVGAVDILLNHRPRRSSKPSIAKLMQRIKNPEYSTTMDVAPVILAAHRNNYEILTMLLK
QDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFEL
SADLKELSLVEVEFRTDYEELAKQCKMFAKDLLAQARNSRELEVILNHTCSEDHVDKRGL
LEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTGLKLLTVLSVALL
WPLLSVCYLLVPRSRVGHIIHTPFVKFILHSASYLTFLLLLNLYSLIYDETKKKTMGPAL
ESIDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNHLSFVMNSLYLATFALKVVAHSKF
KSECSNWKDWDASHPILVAEGLFAVANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGK
FLGLFLLVLFSFTIGLTQLYGKDQKDPSKSRNDNKDCEGIFCEQQSNDAFHTFMGTCYAL
FWYIFSLAHVALFVTRISYTEELRSFVGALIIGTYNIVVVIVLTKLLVAMLHKSFRQIAN
HEDKEWKFARAKLWLSYFDDKCTLPPPLNILTSPKTLCYLVTSLSKWICSHTSTGKMKRQ
NSLKEWRNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNE
MRDLLGFRTSKYAMFYPRS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcggcctcggtgtgctgtcctatccgctccccgtgctgatggctgcgctgtac
cggggcccgcacgccgcctctccgcgcgcccacctcgcgctcaaggatgtccgggaggtg
caggaggagaccacgctggatgagaagctcttcctgttggcctgcgagaaaggtgattac
tacatggtgaagaagctgctggaggaaaaacgcaatggcgagctgaatatcaactgcgtg
gacgtgttggggaaggatgccatcactatcgccatcgagaacgagaacctagatatcctg
cagcttctcctggaccacggctgccagacgacagatgctctgttggttgccattgactct
gaagtggttggagcagttgatattctcctcaaccacaggcccaggcgatcctccaaaccc
tcgattgcgaaactgatgcagcggatcaagaacccggaatattccaccaccatggacgtg
gcccccgtgatcctggctgctcataggaacaactacgagatcctgaccatgcttctgaag
caggacatctcactgccgagacctcacgccgtgggctgcgagtgtactctctgcaacgcc
aagaacaagaaggacagcctgcggcactccaggtttcggctggacatctatcgctgcctg
gcgagtccgtcgctcatcatgctgacggaggaagacccaatcctcagagcgttcgagctc
agcgctgacctcaaggagctcagcctggtcgaggtggagttcaggactgattatgaggaa
cttgccaagcagtgcaagatgtttgcaaaggacctgctagcccaggcacgaaactcgcgc
gagcttgaagtcatcctgaaccacacgtgcagcgaggatcacgtggataagagaggactc
ctggaggagcgcatgaacctcagccgactcaaactcgccatcaagtacaaccagaaagag
ttcgtggcgcagtcgaactgtcagcagttcctgaacacggtgtggtttggtgagatggcg
agttaccggcgtaagcacacggggctgaagctgctgacggtcctgagcgtggcgcttctc
tggcccctgctctccgtctgctacctgctcgtaccgcgctcacgcgtcggccacatcatc
cacacgcccttcgttaagttcatccttcacagcgcctcctacctcaccttcctcctcctg
ctcaacctctactcgctgatctacgacgagacaaaaaaaaagaccatgggtccggcgctg
gagtccatcgactacctgctcatcctctggatcattggaatggtgtggtcagatgtaaag
cgtctatggtacgagggcctggaggacttcctggaggagtcaagaaaccatctgagtttt
gttatgaactctttgtacctggccacgttcgcgcttaaagttgtggcccacagcaagttt
aagagcgaatgctccaactggaaagactgggatgcctctcaccccatcctggttgcagaa
ggacttttcgccgtcgctaacgtgctgagctacctgcgtctcttctttatgtacaccacc
agctccatcctcggccctctccagatctcgatgggtcagatgctgcaggagtttggaaag
ttcctaggcctgttcctgctggtgctcttctccttcaccatcggcctgacgcagctttac
ggaaaagaccagaaggatccgtccaagagcagaaatgacaacaaggactgcgaaggcatc
ttctgtgaacagcagagcaacgacgccttccacacgtttatggggacgtgttacgcgctt
ttttggtacatcttctctctggcacacgtggcgctgttcgtgaccaggatcagctacaca
gaggaactgcgctcatttgtgggcgcccttatcatcggcacgtacaacattgttgtcgtg
atcgttctgaccaagcttttggtggccatgctgcataagagcttcagacagatcgctaac
catgaggacaaagaatggaaatttgcccgggccaagctctggctcagctactttgatgat
aaatgcacattgcctcctccgttaaacatccttacttccccaaagacgctgtgctactta
gtgaccagcctgagcaagtggatctgttcccacacatccactggaaagatgaagagacag
aacagtcttaaggaatggaggaacctgaagcagaaaagggatgagaactaccaaaagata
atgtgctgcctggtgcatcgttacctgacgtccacgcggcaaaagatgcagagcacggac
caggccacggtggagaacctcaacgacctgcggcaggatctgtccaagttccgcaacgag
atgagagacctgctcggctttcgcacatccaaatacgccatgttctatcccagaagctaa
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