Clarias gariepinus (North African catfish): 128520910
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Entry
128520910 CDS
T10780
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04020
Calcium signaling pathway
cgar04080
Neuroactive ligand-receptor interaction
cgar04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
128520910
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128520910
04082 Neuroactive ligand signaling
128520910
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128520910
Ion channels [BR:
cgar04040
]
Ligand-gated channels
Glutamate (ionotropic)
128520910
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
128520910
NCBI-ProteinID:
XP_053351331
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Position
4:complement(14068320..14156838)
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AA seq
1939 aa
AA seq
DB search
MVTVPALPLLLALVEWVGPVISSPHLLLRPRERERDQVAPMHFNIAVIHAGAVAQDEAGV
TGSGGKVLYPGFGRVHSSFGESVVTKWGYVNVIWLQVNDSSPRSLLSQLCDLLASRPVQG
LVYEDERPLPLASGPLAPMLEFVSAQTGLPIVAVGGGAGLGRVPQESGSIFLQFSTSTAL
QLEVIFEVLEEYDWTAFSVVSTRHHGYQDFLSMVEGLTDGSFIGWEKKSVVMLNLTDDPG
GARTRRLLKENEAQVRLLYCSQEEAEQVFHAAWAAGQAGASHMWFAVGPALSELGVNGLP
TRLFAVRPQGWRDEARKRIARGVSVLIHGAMALRQDYGATSGPHFVTNCQTDGNRTQRIR
GRMKYFSNITMSGKDYSFNNDGYLANPFLDVISYTPGSGWEDVGWWENGVLRLRYPAWSR
YGPFLQPPDDAQHLRVVTLEERPFVIVELADPASGTCIRDSVPCRRPLNATAHQEGVAPV
KQCCKGFCIDILKRLAKIVGFTYDLYLVTNGKHGKKIDGVWNGMVGEVVDKRADMAIGSL
TINEERSEVIDFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVT
VFIFEFFSPVGYNRSLQNGKKAGGSKFTIGKSIWLLWALVFNNSVPVENPKGTTSKIMVL
VWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQHPTEQYPPLKFGTVPNGSTEK
NIRSNYPDMHHYMIKYNQKGVEEAITNLKTGKLDAFIYDAAVLNYMARKDEGCKVMTIGS
GKVFATTGYGIALIKNSRWKRPLDLALLQLVGDDEIEMLERLWLSGICHNDKIEVMSSKL
DIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCMSGMGQAGKLDFLLAFSRGMYSCC
SFEDETAQGGPKVIIPTHHHPSVVSAPPSSHVVTAGVTNQAIAMVPQQQQQQQQHLPQPP
QSYKSPLPGSPPAVLHSGGSLGPSATPLLGAPLPCSTFLPRPDRRLAVVDRWRLPKSASA
TTPMNLRGGLSDMGTFPQKIVPTWAGSGPAGSTLDGYKRYYGPIDPEGLGPCMDQQAGTQ
TPKSAPRNHQQPPPAGLAFYQEKGIDHGVGKKVGVCTGGGGQGKGVKSLGTPRLPPKSQT
PAPLPPNPPLQHPSPPLPSSLWRKRRPKKTKEPGGPLYENILPLGRRGGGRDIGRRPRPS
PPLPIPVPVPVSPTYTPPSPSLSLPYTSTSSSTSSTSSSTTSSASSSRSTSPSTTSSTTS
CSTRDREEEEDLDELTEESSLLQGHNRHNNRERSILSPRSLTHGPPPPPIPPRKPRGPFA
ERERERQGSRLRERGGSQLAQLQEWWAGWGERERDRNGGGSGDTERKREKRHRKEREKEK
KKKKKTKKRKKREERERERERKRRKVKKKKKKVMKSKKKKKVSTSKHSEPDEGDVEVERE
GEADGEREGEYASFSNQYRSTFGEKGSLLGWEGERERERRDGGEDVGDEQDEESGGGRSR
ERRPKSSHARHRPSSKKYPNLHKLPSSVKFWVSGGATEPSGGSPQSSIHTLLPSTKRRRS
SGAERDVAGRGGERRPLLLHYDRGRAHTREGLSFHEWDSEDEEENDEVEDEQDREQGRVR
VRRAGGRGAVSESERDRIRADESYSDDGSSGEFGQFERYWEGNGADGASGIGGGGWFFGT
YPAREKGGSINSRDDSILGRTEGWSGDFWGSGSGVGWGSGGGSGGLGLQWPPPPASLPPP
RRYWSVDKLPMKSEKRGHNRSKSKGKRARERDQDMGSYTQISHSRVPCRSKRGSATSHSQ
EELLPHCHSLNEGSRPKLPPKPDGAKSGSQSNLSAQQAQHSEPASSPTQSLLPSLPASSA
PSSLPVPISQPPSSASMSPPPVLSPGTTKGASGSAKLQYQRLRSVPQPRRFYSPHLPLKA
KSLCSRRGSAHFSSLESEV
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atggtcacagtacctgccctgcctctcctgttggctctggtggaatgggtggggccggtc
atctcctcccctcacctcttgctccgcccccgagagcgtgagcgcgaccaggtggcaccg
atgcactttaacatcgcggtgatccatgcgggcgccgtggctcaggacgaggcgggagtg
acagggtccgggggcaaggtcctgtatccaggctttggccgagtgcacagcagcttcgga
gagagcgttgtcaccaagtggggctatgttaatgtcatctggcttcaggtcaatgatagc
agtcccaggagcttgctctcccaactgtgtgacctgttggcatccagacctgtgcagggg
ctggtgtatgaggatgagagaccgctcccactggcgtcaggcccactggcacccatgctg
gaatttgtctcggcccagactggccttcctattgtggctgtgggaggcggagcggggctg
ggcagagtgccacaggagagcggctccatctttctgcagtttagcacctccactgcgctc
cagctcgaagtgatcttcgaggtgctcgaggagtacgattggacagcgttttccgtggtg
tccacgcgtcaccatggctaccaggacttcctatctatggtcgagggtttgacagatggc
tcctttattggctgggagaagaagagtgtggtgatgctgaatttaaccgatgacccaggt
ggagctcgcacacgcagactactgaaggagaacgaggcgcaggttcgtctgctgtactgc
tcccaggaggaggctgagcaggtgtttcatgcagcgtgggctgctgggcaggctggagca
tctcatatgtggttcgctgttggcccggcactgtctgagctgggtgtaaatggcctgccc
acccgtctattcgctgtgaggcctcagggctggagagatgaagcacgcaaacggatcgcc
cggggtgtttccgtccttattcatggggccatggccctgcgccaggactacggcgctacc
agtgggcctcactttgtcacaaactgccagacagatggcaacaggacacaaaggattcgt
gggagaatgaaatatttcagtaacatcacaatgagtgggaaggattactctttcaataat
gatggttacttggccaatccctttctggatgtcatctcctacacacctgggagtggctgg
gaagacgtaggatggtgggagaatggcgtgctacgtttgcgatacccggcctggtctcgg
tacggccctttcctccagcctcccgatgacgcacagcacctgagagtcgtcaccctggaa
gaaaggcccttcgtcatagtggagctggccgaccctgcttcaggaacctgcatcagggat
tctgtaccctgccgacgacctctcaatgccacggctcatcaggaaggggtagctcctgtg
aaacagtgctgcaagggcttttgcatcgatatcctcaagcgtttagccaagattgtaggc
ttcacttatgacctctatctggtcaccaacggaaagcatgggaagaagattgacggcgtg
tggaacggcatggtgggggaggtggtggataagcgtgcagacatggctattggctcactc
accatcaatgaggagaggtcagaggtcatagacttctcagtgccctttgtggagacagga
atcagtgtcatggtctcccgtagtaatggcactgtctcaccctctgccttccttgaacca
tacagccctgcagtttgggtgatgatgtttgttatgtgcctgactgtggtagcagtgact
gtatttatctttgagttcttcagtccagttggatataaccgcagtctgcagaacggcaag
aaagcaggaggttcaaagttcaccataggaaagtccatctggctgctgtgggctttggtc
ttcaataactctgtgcctgtggagaaccccaaaggaaccaccagtaagatcatggtgctc
gtctgggctttcttcgctgtgatctttcttgccagctatacagccaaccttgcggccttc
atgatccaggaagaatacattgacactgtgtctggcctcagtgacaagaagtttcagcac
cccactgaacaatacccacccctgaagtttggaacggtcccaaatggcagcacagagaag
aacattcgcagtaattacccagacatgcaccactacatgatcaaatacaaccagaaagga
gtggaagaagccatcactaacttgaagacaggtaagctggatgcatttatctatgatgcc
gcagtgctgaactacatggctcgtaaggacgagggctgtaaagtgatgactatcggctct
ggtaaagtctttgccaccacgggctacggcattgccctcattaagaactcccgctggaag
cgaccgctggacctggcactgctacagctggttggcgatgatgaaattgagatgctggag
cgtctctggctttcagggatatgccacaatgataagattgaagtgatgagctccaagctg
gacattgacaatatggctggagtcttttacatgttgttggtggccatgggcctgagtcta
ctagtgtttgcctgggagcaccttgtctattggaggctccgccattgtatgagtggaatg
ggccaagctggcaaactggactttctacttgctttcagcaggggaatgtatagctgttgc
agttttgaggatgaaactgcccaaggtggacccaaagtcatcattcctacccaccatcat
ccctctgtggtgtcagcccctccctcctcccatgtggtcactgcaggtgtcaccaaccaa
gccattgccatggtgccacagcaacagcagcagcaacaacagcacctaccccagcctccg
cagtcctacaaatccccacttcctgggtcccctcctgctgtgctacattctgggggatct
ttggggccctctgctacaccacttctgggtgctcctcttccatgctccacatttttgccc
cgaccagaccgcagactagctgtagtagaccgctggaggctgccaaaatctgccagtgcc
accacaccaatgaatcttagaggtggtttgtctgacatggggaccttcccccaaaaaata
gttcctacatgggcaggtagtggacctgctggaagcactttggatggatataagcgctac
tatggccctattgaccctgaaggcttgggaccatgtatggatcaacaagcaggcactcag
actccaaaatcagctcccaggaaccatcagcaacccccaccagctggtttggctttttat
caggaaaagggcatagatcatggggtggggaagaaggtgggagtgtgtactggtggaggg
ggtcaggggaagggggtgaagtctttgggcactccaaggctgccaccaaaaagtcagact
ccagccccattgccacctaaccccccactgcagcacccctctcctcctcttccctcatcc
ctttggaggaagcggaggcccaaaaaaacaaaagagcctggtggcccactgtatgagaac
attctgcccctaggccggagaggaggtggaagagatataggtcgtagacccagaccatct
ccccctcttcctattccagtacctgtaccagtttccccaacatacacaccaccatcaccc
tccctctctcttccgtacacctccacctcatcctccacctctagcactagttcctctacc
acatcctctgcctcttcttctcgatcgacctctccttcaaccacctctagcactacctca
tgcagtaccagggatagggaggaagaggaagacttggatgagctgacagaggagtccagt
cttcttcagggacacaaccggcacaacaacagggagcgctccattctgtccccgagatct
cttacacatggtccaccaccaccccctattcccccacgcaaaccccgtggtccatttgca
gagcgtgaacgagagaggcagggcagtagattaagagaaagaggtggcagccagcttgct
cagctccaggagtggtgggcaggatggggggagagagagagagaccggaacggtggaggt
tctggtgacactgaacggaaaagggagaaaaggcacaggaaagagagagagaaagagaaa
aagaaaaagaaaaaaacgaaaaagaggaaaaagagagaggaacgtgaaagggaaagggag
cgtaagcggcggaaggtgaagaagaaaaagaaaaaggtgatgaagtcaaagaagaagaag
aaggtatccaccagcaagcattcagagccagatgaaggggatgtagaggtagagagagaa
ggagaagctgatggagagagagagggtgagtatgcctctttctcgaaccaataccggagc
acatttggagaaaagggaagtcttttaggttgggaaggagagagagagcgagaaaggaga
gatggaggagaggatgtgggagatgaacaagatgaagagagtggaggaggtcggagtaga
gaaagacggccaaagagtagccatgcacgtcacagaccatccagcaagaaatacccaaat
ctccacaaacttccttcttccgtcaaattttgggtcagtggaggggctacagaaccctct
ggaggctcacctcaatcctcaatacatacacttcttccatcaactaagcgaaggagaagc
agtggagcagagcgagatgtggcagggagggggggtgagcggcggccattacttctgcac
tatgatagaggccgggcgcatacccgtgagggcttgtccttccatgagtgggactctgag
gatgaagaggaaaatgatgaagtagaggatgaacaggacagggagcaaggaagggtaaga
gtgagaagggcagggggcagaggggctgtgtctgagtctgaaagggatcgaattagagct
gatgagagttattctgatgatggctcctcaggggagtttggccaatttgaaagatactgg
gaaggcaatggggcagatggagcaagtgggattggcggtgggggttggttttttggcacc
tacccagcccgagagaaagggggaagcatcaacagcagagatgattcaatactaggtcga
actgaagggtggagtggagatttttggggctcaggttcaggagttggatggggctctggt
ggtggaagtgggggtcttggcttacaatggccacctcctccagcatcacttccaccccct
cgaaggtattggtcagttgataagctgcccatgaagagtgagaaacgtggtcacaatagg
tcaaagagcaaaggaaaaagggctcgagaaagggaccaggatatgggatcatacacacag
attagccacagcagagtgccctgtcggtccaaacgaggcagtgccacctcccacagtcaa
gaggagttactgccccactgccacagtctgaatgagggctcccgacccaaacttcctccc
aaacctgatggtgccaaatccggcagtcagtccaacctcagcgcccaacaagcccaacat
tcggagccagcatcctcccctacccagtccttactgccatcgctccctgcaagctctgca
ccctcttccctccctgtacccatctcacaacccccttcttctgcatccatgtctccccca
ccagtattatcacctggtaccacaaaaggggctagtggtagtgctaaacttcagtaccag
agactgcgctctgttccccagccacgacgcttctactcgccccacctaccccttaaagca
aaaagcctgtgttctcgacgtggctctgctcacttttccagccttgaaagtgaagtatga
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integrated database retrieval system
