Clarias gariepinus (North African catfish): 128520993
Help
Entry
128520993 CDS
T10780
Symbol
itga10
Name
(RefSeq) integrin alpha-10
KO
K06586
integrin alpha 10
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
cgar04810
Regulation of actin cytoskeleton
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128520993 (itga10)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128520993 (itga10)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128520993 (itga10)
04810 Regulation of actin cytoskeleton
128520993 (itga10)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128520993 (itga10)
Cell adhesion molecules [BR:
cgar04515
]
Integrins
Integrin alpha subunits
128520993 (itga10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_1
VWA_2
Integrin_A_Ig_3
FG-GAP_3
vWA_SIBA-E
FG-GAP_2
ITGAX-like_Ig_3
TM_ErbB1
EIF3I
Motif
Other DBs
NCBI-GeneID:
128520993
NCBI-ProteinID:
XP_053351465
LinkDB
All DBs
Position
4:complement(14578667..14610798)
Genome browser
AA seq
1170 aa
AA seq
DB search
MEIRECLLLLKVTVLLKGLCQCFNIDVNRPRIFSGVEDTLFGFSVLQHEVGGEKMMLVGA
PWDGPPNNRRGDIYKCMMGEELNSNCSKVGLADTAFQNVSRNLKNSHLGMTLTPNKPNGF
LACAPLWSQECGTSLFSKGICASVDNDLEPKETIAPTAQRCTTYMDIVIVLDGSNSIYPW
SEVQNFLKNILSKFHISPEQMQVGILQYGETTVHEWSLKEYQTTEEVVKAAKNINRQEGR
ETRTAGAIRMACTEAFSAEKGARDGATKVMIVVTDGESHDGDELPDVLDECEKRNITRYA
IAVLGHYIRRQQDPETFINEIKSIASDPDEKYFFNVTDEAALNDIVDALGDRIFSLEGTL
GFNQSTYLMEMSQIGFSTHILNDGILFGMVGAYDWEGGVLKEGIDGRNMPPREAFEEEFP
IKLKNHAAYLGYTVSSVTVGDWRRLYVAGAPRFKHKGKVILFDLSLDGDVNITQAIEGEQ
IGSYFGSEVCVVDVDHDGITDILLIAAPMFLGAGNKETGKVYVYCLDGNDFAPNGTLHAQ
KKAQDARFGYAMAVAPDLNHDGYSDLLVGAPLEDDHQGALYIYHGDEFYIKPHYKQRISA
SSFSAGLQYFGRSLSALLDMDGDKLLDLAVGAHGSAVLLRSRSIVQINVSLFFHPHSINV
IQKNCHKGGRDSACLTATACFLAVSRSPGSNGTTFDLQVGAMLDDRKLSARALFDANSQR
QILTRVRAEIGKSVCHTLPFHVFDTADYIRPISFSLNFKINDTDSGPVLDEGWPTTLKKT
ISFYKDCGEDDVCVTNLVLQAHMDIKGTRQQPYVIQSPRRRLAVEVQLQNQLENAYNTSL
ILYYSKNLHFSSLSIREDGQFKIECTGLSANIHSCNVSYPVFRSGTKVNFMLEFEFSCTS
LINKVQMKLVAASDSVEQENTLSDNTVHLQSIVQYEPDLFITSDSNLNRYEVHPTRTVSE
GTGPEFFTNFRVQNLGCYAVSNLELRVNLPSVAATDKAFASAVDAYSRNTSGVNCSIRSE
LAQLKATQRDVRPLHPEDMKKNEFLNCSSSWCVEVVCQIQQLLKGQTAVIRVTRRVHDNF
FRQAKFKAVMIVGSYHLSAQESNLITLGNAGLWRETVLEVLKGRSIPISLWILIGSIIGG
LLLLALIIFILWKLGFFTRKQIKEDEDDKD
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggagattcgagagtgcctgcttctactaaaagtcaccgttctactaaaaggactgtgc
cagtgttttaacatagacgtgaatcggccacgcatcttcagcggggttgaggacactctg
tttggattttctgtgctacagcatgaagttgggggagagaaaatgatgttggttggtgct
ccatgggatggtccacctaataacagaagaggagacatttacaaatgcatgatgggggag
gaactgaattccaactgttcaaaagtgggtctagctgacactgcatttcagaatgtgtca
cggaatctgaagaactctcacttgggtatgacgcttacccccaataaacccaatggattt
ctggcctgtgcaccactttggtctcaggagtgtggcacatctctcttcagcaaagggatc
tgtgcatctgtcgacaacgacttggagcctaaagaaaccatcgctcctacagcacagaga
tgtactacctatatggacatagtaatagtccttgatggttctaacagtatttacccctgg
tctgaagtgcagaacttcctcaagaacatcctcagcaagttccatatcagtccagagcag
atgcaggtgggcatcctgcagtatggagagaccacagttcacgagtggtcccttaaggag
tatcagacgacagaggaagtggtgaaagctgccaagaacattaatcgacaggaagggcga
gagactcgcacggcaggcgcaatacggatggcctgcacagaggcattcagtgctgaaaaa
ggggcgagagatggagccactaaggtgatgattgtggtgacagatggagagtcacatgat
ggcgacgagcttcctgatgtactagacgagtgcgagaaacgcaacatcaccagatacgcc
atagctgttttgggtcactacattcgcaggcagcaggacccagagacttttattaatgag
atcaaatctattgccagtgacccagatgagaaatactttttcaatgtaacagatgaagcg
gcattgaatgacattgtagatgctcttggggatcgaatctttagtttggaagggacactg
ggatttaatcaaagtacctacctcatggagatgtcacagattgggttctcaacacacatt
ctaaatgatgggatcttgtttggcatggtgggagcttatgattgggaaggaggggtgttg
aaggagggtattgatggaagaaacatgcctccccgagaagcctttgaggaagaatttccc
atcaagctaaagaatcatgcagcatacctaggttatactgtgtcctcggtgacagtaggt
gactggagaagactctatgtggctggggcacccagattcaaacacaaaggaaaggtcatt
ctctttgacctgagtctagatggagatgtcaacatcacacaggccattgaaggagagcaa
attggctcctattttggcagtgaggtttgtgtggtggatgtagatcatgatggtataacc
gatatcctcctgattgctgctcccatgtttctgggagcaggaaacaaagagacagggaaa
gtctatgtatactgtctagatgggaatgattttgctccgaacgggaccctgcatgctcaa
aagaaagcccaggatgcacggtttggttacgccatggccgtggctccagacctcaaccat
gatggctattctgaccttctagtgggagcaccgctggaggatgatcaccagggtgcactt
tacatctaccatggcgatgaattctatataaaaccccattacaagcagcgtatctctgcc
tcctctttctctgcaggcctgcagtattttggccgcagtttgagcgctttgttggatatg
gatggagacaagttactggatctggcagtcggagcccatggcagtgccgttctcctgagg
tctcgcagcatagttcagatcaacgtaagcctgttctttcatcctcactccatcaacgtc
atacagaagaactgccacaagggcggccgtgattcagcatgccttactgccaccgcctgc
ttcctggctgtgtcccgttccccaggctcaaatggcacaacctttgatctgcaagtgggg
gccatgttggatgacaggaagttgtctgcacgtgctttgtttgatgctaactctcaaagg
cagatactgactcgggtcagagctgaaataggaaagtctgtgtgccacacactccccttc
catgtgtttgacacagcagattacatccgacccatcagtttctctctaaacttcaaaatc
aatgacacagatagtggcccagtgctcgatgaaggctggccaaccacacttaagaaaact
atttcgttttataaagactgtggcgaagatgatgtgtgtgtgacaaatctggttttgcaa
gcccacatggacatcaaaggaacaaggcagcagccttacgtgattcaaagtcctcgaaga
cgcctggctgttgaggttcagctccagaaccagttagagaatgcttataacacgagcctc
atcctttattactccaaaaacctacatttcagcagcttgagtatacgggaggatggccaa
tttaagatcgagtgtactggactgagtgccaacattcactcttgcaatgtcagctatcca
gtgtttcgctcagggaccaaggtgaactttatgttggagtttgaatttagttgcacatct
cttatcaataaagttcaaatgaagctggttgcagcaagtgacagtgttgagcaagaaaac
actctgtcagacaacaccgttcatttacagagtatagtacagtacgagcctgatctcttc
atcaccagtgattccaatctaaaccgctatgaggtccatcccaccaggacagtatcagaa
ggaacaggacctgaattcttcacaaatttcagggtacagaatctaggttgttatgcggtc
agcaatctggagctgagggtcaatttaccctctgtagctgccacagacaaagctttcgct
tctgcagtggatgcttactcacgcaatacctctggtgtgaactgcagtattagaagtgaa
ttagcccagctgaaagctactcagagagacgtgcgtccattgcatcctgaagacatgaag
aaaaatgaatttttaaactgcagctcctcttggtgtgtggaggtcgtgtgtcaaatccag
caactactgaaggggcagacagccgttattcgcgttactagaagggtgcatgacaacttc
ttcagacaggctaagtttaaagctgtgatgatagttggctcctaccacctgtctgctcaa
gagtctaatctgatcacactgggtaatgctggtctttggagggagaccgtgctggaggta
ctcaagggtcgctcgattcctatttctttgtggatcctcatcggcagcatcatcggaggc
ctgttgctgcttgcacttatcattttcatcctttggaagctgggctttttcacaagaaaa
cagataaaagaggatgaggatgacaaggactga
DBGET
integrated database retrieval system
