Clarias gariepinus (North African catfish): 128521636
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Entry
128521636 CDS
T10780
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128521636 (exosc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128521636 (exosc4)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
128521636 (exosc4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
128521636 (exosc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
128521636
NCBI-ProteinID:
XP_053351530
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Position
1:complement(14022984..14025811)
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AA seq
245 aa
AA seq
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MAGLELLSDQGYRLDGRKAAELRKVQARMGVFGQADGSAYMEQGNTKALAVVYGPHEVRG
SRSKSLHDRAVINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTQLYPRSQ
IDIYVKILQSDGGNYSACVNAATLALVDAGIPMRDYVCACTAGFVEDTPLADLCHAEESG
GGTTLSLAVLPRSENIALVQMDARLHQDHLAALMEAATVACKGLSKVLDSVVRQHLQEVS
VQTRE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggctggactggagctgctctccgatcagggttaccggctggatggacggaaggccgcg
gagctgcggaaggtccaggcccgcatgggggtgttcgggcaggcggacgggtctgcgtac
atggagcagggcaacacgaaggcgctggcggtggtgtacggaccgcatgaggtccgaggg
tctagaagtaaatccctacacgaccgtgcggtcattaactgtcagtacagcatggccaca
ttcagcacggccgagaggaaaagacgaccgcatggcgaccgcaagtccagcgaaatgagc
cttcacctgaaacagacctttgaagcggccgtcctcacccagctttacccacgctcccag
atcgacatctacgttaagatccttcagtcagacggtggaaactacagcgcgtgtgtcaac
gcggctactctggccctggtggacgccggcatccccatgcgcgattacgtgtgcgcctgc
acggctggctttgtggaggacacgccgctggctgacctgtgccatgccgaggagagcggt
ggtggcaccacactatccctagcagtcctgcctcgcagcgagaacatcgcgctggtgcag
atggatgcccgtcttcaccaggaccacctggcagcgctgatggaggctgcgacagtcgcc
tgtaagggtctcagtaaagtgctggacagtgtagtgcgccaacacctgcaggaggtttcc
gtgcagacgcgagagtga
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