KEGG   Clarias gariepinus (North African catfish): 128523927
Entry
128523927         CDS       T10780                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar04382  Cornified envelope formation
cgar04510  Focal adhesion
cgar04512  ECM-receptor interaction
cgar04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128523927 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128523927 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128523927 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    128523927 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cgar04147]
    128523927 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:cgar00536]
    128523927 (col4a1)
Exosome [BR:cgar04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128523927 (col4a1)
Glycosaminoglycan binding proteins [BR:cgar00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128523927 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128523927
NCBI-ProteinID: XP_053352109
LinkDB
Position
5:complement(19151002..19200724)
AA seq 1642 aa
MAAGGAVRVLRGSLFLLAAVVFSADPSRAEGCSGSSCGKCDCSGVKGAKGERGLPGLQGN
MGFPGVQGHEGPQGPMGPKGDLGEPGANGMKGIRGPPGLPGIPGIPGHPGIPGQDGPQGL
RGIPGCNGTKGDQGRDGIPGIPGLQGPPGFPGDPGAKGDPGGIIGGFIPQKGDRGFPGTP
GLPGQAGNPGLPGPVGPSGLDGLRGPPGEPGPPGPPGDRLTFVGQKGEKGEKGLTGPPGP
PAEPRPQERPDEIHTIVGPRGEKGAPGEKGEMCSPYQAGIKGEPGPPGPIGKVGKDGESG
AKGEKGQSGPPGFSGSKGQKGERGPPGHGDGVPGPPGPPGSDGPVGEIGPRGYPGEPGPP
GKNTQGPPGERGFPGEIGQKGDKGADGESLRGPKGIEGAPGLPGPPGELSEECNIDQGEP
GPPGPPGLQGEVGQKGDKGDTCTACSASGLPGSPGVPGPKGNQGFPGIAGSKGEKGQNGP
AGPPGYPGNDGSPGLFGAPGPKGEPGDIYISPELKGEKGAAGVPGSRGLPGVDGFPGEDG
HPGRPGQKGEPAREGVKGERGQDGQPGVRGPIGERGPPGLPGTGQLGEAGEKGSPGIPGT
PGRPGIPGPKGEPGQSLPGPPGPPGPRGETGFHGLQGERGPAGDQGWPGEPGQKGETGRP
GIGLPGSPGPKGYSGLPGGPGFPGDPGNPGQDGSPGRPGTPGQKGEPGIGLRGPKGSMGP
RGEQGFQGEKGNVGMPGFPGIEGKSGPPGPQGVKGDAGPPGFPGLSGPPGPAGHGEPGLP
GPMGPPGDPGPLGRIGEKGEKGPQGHPGPPMPGPQGEKGTPGLPGTPGPKGLPGQPGSLG
KDGMPGERGTKGDIGIMGIPGSPGLPGDQGAPGAIGSRGDPGLPGPRGEFGEEGPKGERG
DPGLQGPPGNITDVEMEHMKGEKGDSGDRGDPGPTGARGVSGTPGDPGIAGKDGMPGSPG
KPGEKGDSGLPGQTGPDGQPGVKGSMGEMGLPGVTGPKGSKGIAGQPGHHGFKGDSGYKG
EKGTAGLPGLGLPGLPGEKGEMGPPGFPGDSGQKGVKGSMGIPGMPGITGQKGDIGVTGH
PGNPGVPGDKGLPGLPGSPGQPGLEGRPGEPGLQGAPGPQGKKGEAGKDGFPGAAGERGE
PGLPGRGFPGTPGQEGTKGEKGNPGPPGMPGVSGIPGSKGEKGLPGFQGSQGRPGERGLP
GPSMEGPKGDRGSQGEPGEPGQTGAPGPAGVPGSAGFKGERGEKGYPGIQGIEGLKGDKG
YTGQPGEPGLPGYKGVKGEMGVPGPPGFQGLKGDHGLTGFKGEVGDRGFPGAKGNVGPPG
PPGETVLIKGDIGLPGPQGPQGFPGLQGYPGTKGLQGLTGTQGFKGDDGIPGYNGVPGNK
GEPGHGGPSGPRGYPGPPGPDGTPGQVGPPGPSSMDHGFLVTRHSQSIEVPLCPQGTTMI
YDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPE
PMPMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIAIPACPQGWVSLWIGYSFVMHT
SAGSEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFSKPVP
TTLKAGNLRTHISRCQVCMKRT
NT seq 4929 nt   +upstreamnt  +downstreamnt
atggcagctggaggcgctgtgcgcgtcttacgcggctcgctgtttctgttggcagctgtt
gtgttcagcgcagatcccagcagagctgagggatgttcaggttcatcatgtgggaagtgt
gactgcagtggtgtaaagggggccaagggtgagaggggtttacctggcttacaaggcaat
atgggatttcctggtgtgcaaggtcatgagggcccccaagggccaatgggaccaaaggga
gatcttggtgagccaggggctaatggaatgaaaggaataaggggccctcctggtttacct
ggtattccgggaattcctgggcacccgggtattccaggtcaagatggcccacagggactg
cgcggtatcccaggctgcaatggaacgaagggggaccaaggtagagatggaattccaggc
ataccaggattgcaaggaccaccaggttttcctggtgatccaggagcaaagggtgaccca
ggtggtattattggtgggtttattcctcagaaaggagatagaggttttccaggaactcca
ggattgccaggacaggcaggaaaccctggactaccaggaccagttggtccatcaggacta
gatgggcttcgaggaccacccggtgaacctggacctcccggccctcctggagatagactt
actttcgttggtcaaaaaggtgaaaagggtgaaaaaggcctcacaggcccgccagggcca
cctgcagaacccagacctcaagaaagaccagatgaaatccatactatcgttggaccacgt
ggtgaaaaaggggcccctggagaaaagggtgaaatgtgttcaccatatcaagcaggaatc
aaaggtgaaccaggacctcctggcccgataggaaaagtaggaaaggatggagaaagtgga
gctaagggggaaaagggacaatctggtccccctggcttttctggctcaaaggggcaaaag
ggagagaggggacctccaggacatggtgatggtgtgcctggccctccgggtcctccaggc
tcagatggaccagtaggagagattggccctcgtggataccctggagagccgggtccccca
ggcaagaacactcagggtccacctggggaaagaggctttcctggggaaattggacagaag
ggggacaaaggtgctgatggagagtctctcagaggacctaagggaattgaaggagctcct
ggtctgcctggacccccaggggaattgagtgaggaatgtaacattgatcagggagaacca
ggccctcctggacctcctgggttgcaaggagaagtgggacagaaaggtgacaaaggagac
acttgtacagcgtgttctgctagtggactgccaggttcacctggtgttccaggaccgaaa
ggaaatcaaggtttccctggaatagcaggtagtaaaggagaaaagggtcagaatggtcct
gctggacctcctggatatccgggaaatgatggctccccgggtttgtttggtgctcctggg
ccaaaaggtgaaccaggtgacatctatatatctccagagctaaagggagagaagggtgca
gcaggtgttcctggcagtaggggattaccaggcgtagatggatttcctggggaggatgga
catccaggtagaccaggacagaaaggagagccagctagagagggtgttaaaggtgaacgt
ggtcaggatggacagcctggtgtaagaggacccattggtgaaagaggaccaccaggtctt
cctggaactggccaacttggagaggctggagaaaagggtagtccaggaattcccggtact
ccaggaaggccaggaataccaggacccaaaggtgaacctggacaaagtttaccaggacca
ccaggtccgccaggacctcgtggtgagacaggtttccatggacttcaaggtgaaagaggt
cctgctggggatcaaggatggccaggggaaccaggtcaaaaaggtgaaactggtcgtcca
ggcattggacttccaggttcaccaggtccaaaaggttactctggtttgccaggtggacca
ggattccctggagacccaggcaatccaggccaggacggttctccgggacgcccaggaaca
cctggacaaaaaggtgaacctggcattggccttcgaggaccaaaaggctcaatggggccc
agaggagaacaagggtttcaaggtgaaaagggtaatgtaggaatgccagggttccctgga
atcgaaggaaaatcggggccacctggtcctcagggtgttaaaggtgacgctggccctcct
ggattcccaggtttgtcaggaccacctggacccgcaggacatggtgagcctggactacct
ggaccgatgggaccccctggagatcctggtcctttaggtcgtattggagaaaagggagaa
aaaggtccccaaggtcatcctggtcctccaatgcctggccctcaaggtgaaaagggcacc
cctggtttacctggaacaccaggacctaaggggttgccaggacaaccaggaagtctgggt
aaagacggaatgcctggggagagaggtaccaaaggagatattggaataatgggaattcca
gggtcacctggattaccaggtgatcaaggagcccctggagctattggatcaagaggtgac
cctggtctgcctgggcctaggggagagtttggtgaagagggccctaaaggagagagaggt
gatccaggtcttcaaggaccccctggaaatataactgatgtggaaatggagcatatgaaa
ggagagaagggagacagcggagacagaggggatccaggtcctacaggagctagaggagtt
agtggaacacctggagatcctggaatagctggaaaggatggaatgcctggttcaccagga
aaaccaggtgagaaaggtgattcaggactcccaggacaaacaggaccagatggacagccc
ggagtaaaaggcagcatgggagaaatgggattgccaggagtaactgggccgaaaggcagt
aaaggtattgctggtcagcctggccatcacggatttaagggtgattcaggatacaaaggt
gaaaagggaacagcaggtttgccaggattaggattgcctggccttcctggtgagaagggt
gaaatgggcccacctggttttcctggggattctggacaaaagggagtgaaaggttccatg
ggaatcccaggcatgcctggaataacaggacaaaaaggagacataggcgtgactggtcac
ccaggcaaccctggggtgccaggtgataaagggttacctgggttacctggatcaccagga
cagcctggtcttgaaggacggccaggtgaacctggtctgcagggtgccccagggccacaa
ggaaagaaaggagaggctggaaaagacggattccctggagccgctggagagaggggtgaa
ccaggtttacctggtagaggctttcctggaacccctgggcaagagggcacaaaaggtgaa
aaaggcaatccaggtccacctggcatgcctggagtctctggtattcccggttccaaagga
gagaagggcctgccgggattccaaggtagtcagggtcgacctggtgaaagaggactacca
gggccatcaatggaaggaccaaaaggcgatagaggatctcagggagagcctggagaacca
gggcagactggtgctccaggaccagcaggtgttccaggtagcgctggatttaaaggagag
agaggagaaaaaggttatccaggcatacagggtattgagggtttgaaaggcgataaagga
tacactggtcaacctggtgaacctggcttaccaggctataaaggagtaaagggtgaaatg
ggagttccgggtcctcctggcttccaaggactaaagggtgaccatggattgactggattc
aaaggagaggttggtgacagaggatttccaggagcaaaaggtaatgttggccctcctgga
cctcctggagaaactgtccttataaagggagacattggtttgccaggaccacaaggtccc
cagggtttcccagggcttcaagggtatcctggaacaaaaggactgcaaggattgactggt
acgcaaggttttaaaggagacgatggtataccaggatacaatggggttcctggaaataaa
ggagaacctgggcatggaggaccttccggtcccagaggttacccaggtcccccaggtcct
gatggtaccccaggtcaggttggccctcctggaccctcctccatggatcatggcttctta
gtgactcggcacagtcagtccattgaagtgccactgtgcccacaaggcaccactatgatc
tatgatgggtactcccttctgtacgtgcagggaaatgagcgatctcatggccaagacctg
ggtactgctggtagctgcttgaggaagttcagccccatgccgttcctcttctgcaacatc
aacaatgtgtgcaactttgcttctcgtaatgactattcctactggctcacatctcctgag
cccatgcctatgagcatggctcctatcactggcgagagcatcaaacctttcatcagcaga
tgtgcagtatgtgaggctcctgccatggtgattgctgtgcacagtcagactatagccatc
ccagcctgccctcaaggctgggtatctctatggattggttattcttttgtcatgcacacc
agtgcaggttctgagggctctggtcaggctctggcctctcctggctcctgtctggaggag
ttccgctcagctcccttcatcgagtgtcatggccgtggcacatgcaactactatgcaaac
tcatacagcttctggttggccaccatcgaggataatgagatgtttagcaaacctgtgccc
accacgctaaaggctggaaatctccgaactcacatcagtagatgtcaagtgtgcatgaag
aggacttag

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