Clarias gariepinus (North African catfish): 128523927
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Entry
128523927 CDS
T10780
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
cgar04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128523927 (col4a1)
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128523927 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128523927
NCBI-ProteinID:
XP_053352109
LinkDB
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Position
5:complement(19151002..19200724)
Genome browser
AA seq
1642 aa
AA seq
DB search
MAAGGAVRVLRGSLFLLAAVVFSADPSRAEGCSGSSCGKCDCSGVKGAKGERGLPGLQGN
MGFPGVQGHEGPQGPMGPKGDLGEPGANGMKGIRGPPGLPGIPGIPGHPGIPGQDGPQGL
RGIPGCNGTKGDQGRDGIPGIPGLQGPPGFPGDPGAKGDPGGIIGGFIPQKGDRGFPGTP
GLPGQAGNPGLPGPVGPSGLDGLRGPPGEPGPPGPPGDRLTFVGQKGEKGEKGLTGPPGP
PAEPRPQERPDEIHTIVGPRGEKGAPGEKGEMCSPYQAGIKGEPGPPGPIGKVGKDGESG
AKGEKGQSGPPGFSGSKGQKGERGPPGHGDGVPGPPGPPGSDGPVGEIGPRGYPGEPGPP
GKNTQGPPGERGFPGEIGQKGDKGADGESLRGPKGIEGAPGLPGPPGELSEECNIDQGEP
GPPGPPGLQGEVGQKGDKGDTCTACSASGLPGSPGVPGPKGNQGFPGIAGSKGEKGQNGP
AGPPGYPGNDGSPGLFGAPGPKGEPGDIYISPELKGEKGAAGVPGSRGLPGVDGFPGEDG
HPGRPGQKGEPAREGVKGERGQDGQPGVRGPIGERGPPGLPGTGQLGEAGEKGSPGIPGT
PGRPGIPGPKGEPGQSLPGPPGPPGPRGETGFHGLQGERGPAGDQGWPGEPGQKGETGRP
GIGLPGSPGPKGYSGLPGGPGFPGDPGNPGQDGSPGRPGTPGQKGEPGIGLRGPKGSMGP
RGEQGFQGEKGNVGMPGFPGIEGKSGPPGPQGVKGDAGPPGFPGLSGPPGPAGHGEPGLP
GPMGPPGDPGPLGRIGEKGEKGPQGHPGPPMPGPQGEKGTPGLPGTPGPKGLPGQPGSLG
KDGMPGERGTKGDIGIMGIPGSPGLPGDQGAPGAIGSRGDPGLPGPRGEFGEEGPKGERG
DPGLQGPPGNITDVEMEHMKGEKGDSGDRGDPGPTGARGVSGTPGDPGIAGKDGMPGSPG
KPGEKGDSGLPGQTGPDGQPGVKGSMGEMGLPGVTGPKGSKGIAGQPGHHGFKGDSGYKG
EKGTAGLPGLGLPGLPGEKGEMGPPGFPGDSGQKGVKGSMGIPGMPGITGQKGDIGVTGH
PGNPGVPGDKGLPGLPGSPGQPGLEGRPGEPGLQGAPGPQGKKGEAGKDGFPGAAGERGE
PGLPGRGFPGTPGQEGTKGEKGNPGPPGMPGVSGIPGSKGEKGLPGFQGSQGRPGERGLP
GPSMEGPKGDRGSQGEPGEPGQTGAPGPAGVPGSAGFKGERGEKGYPGIQGIEGLKGDKG
YTGQPGEPGLPGYKGVKGEMGVPGPPGFQGLKGDHGLTGFKGEVGDRGFPGAKGNVGPPG
PPGETVLIKGDIGLPGPQGPQGFPGLQGYPGTKGLQGLTGTQGFKGDDGIPGYNGVPGNK
GEPGHGGPSGPRGYPGPPGPDGTPGQVGPPGPSSMDHGFLVTRHSQSIEVPLCPQGTTMI
YDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPE
PMPMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIAIPACPQGWVSLWIGYSFVMHT
SAGSEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFSKPVP
TTLKAGNLRTHISRCQVCMKRT
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggcagctggaggcgctgtgcgcgtcttacgcggctcgctgtttctgttggcagctgtt
gtgttcagcgcagatcccagcagagctgagggatgttcaggttcatcatgtgggaagtgt
gactgcagtggtgtaaagggggccaagggtgagaggggtttacctggcttacaaggcaat
atgggatttcctggtgtgcaaggtcatgagggcccccaagggccaatgggaccaaaggga
gatcttggtgagccaggggctaatggaatgaaaggaataaggggccctcctggtttacct
ggtattccgggaattcctgggcacccgggtattccaggtcaagatggcccacagggactg
cgcggtatcccaggctgcaatggaacgaagggggaccaaggtagagatggaattccaggc
ataccaggattgcaaggaccaccaggttttcctggtgatccaggagcaaagggtgaccca
ggtggtattattggtgggtttattcctcagaaaggagatagaggttttccaggaactcca
ggattgccaggacaggcaggaaaccctggactaccaggaccagttggtccatcaggacta
gatgggcttcgaggaccacccggtgaacctggacctcccggccctcctggagatagactt
actttcgttggtcaaaaaggtgaaaagggtgaaaaaggcctcacaggcccgccagggcca
cctgcagaacccagacctcaagaaagaccagatgaaatccatactatcgttggaccacgt
ggtgaaaaaggggcccctggagaaaagggtgaaatgtgttcaccatatcaagcaggaatc
aaaggtgaaccaggacctcctggcccgataggaaaagtaggaaaggatggagaaagtgga
gctaagggggaaaagggacaatctggtccccctggcttttctggctcaaaggggcaaaag
ggagagaggggacctccaggacatggtgatggtgtgcctggccctccgggtcctccaggc
tcagatggaccagtaggagagattggccctcgtggataccctggagagccgggtccccca
ggcaagaacactcagggtccacctggggaaagaggctttcctggggaaattggacagaag
ggggacaaaggtgctgatggagagtctctcagaggacctaagggaattgaaggagctcct
ggtctgcctggacccccaggggaattgagtgaggaatgtaacattgatcagggagaacca
ggccctcctggacctcctgggttgcaaggagaagtgggacagaaaggtgacaaaggagac
acttgtacagcgtgttctgctagtggactgccaggttcacctggtgttccaggaccgaaa
ggaaatcaaggtttccctggaatagcaggtagtaaaggagaaaagggtcagaatggtcct
gctggacctcctggatatccgggaaatgatggctccccgggtttgtttggtgctcctggg
ccaaaaggtgaaccaggtgacatctatatatctccagagctaaagggagagaagggtgca
gcaggtgttcctggcagtaggggattaccaggcgtagatggatttcctggggaggatgga
catccaggtagaccaggacagaaaggagagccagctagagagggtgttaaaggtgaacgt
ggtcaggatggacagcctggtgtaagaggacccattggtgaaagaggaccaccaggtctt
cctggaactggccaacttggagaggctggagaaaagggtagtccaggaattcccggtact
ccaggaaggccaggaataccaggacccaaaggtgaacctggacaaagtttaccaggacca
ccaggtccgccaggacctcgtggtgagacaggtttccatggacttcaaggtgaaagaggt
cctgctggggatcaaggatggccaggggaaccaggtcaaaaaggtgaaactggtcgtcca
ggcattggacttccaggttcaccaggtccaaaaggttactctggtttgccaggtggacca
ggattccctggagacccaggcaatccaggccaggacggttctccgggacgcccaggaaca
cctggacaaaaaggtgaacctggcattggccttcgaggaccaaaaggctcaatggggccc
agaggagaacaagggtttcaaggtgaaaagggtaatgtaggaatgccagggttccctgga
atcgaaggaaaatcggggccacctggtcctcagggtgttaaaggtgacgctggccctcct
ggattcccaggtttgtcaggaccacctggacccgcaggacatggtgagcctggactacct
ggaccgatgggaccccctggagatcctggtcctttaggtcgtattggagaaaagggagaa
aaaggtccccaaggtcatcctggtcctccaatgcctggccctcaaggtgaaaagggcacc
cctggtttacctggaacaccaggacctaaggggttgccaggacaaccaggaagtctgggt
aaagacggaatgcctggggagagaggtaccaaaggagatattggaataatgggaattcca
gggtcacctggattaccaggtgatcaaggagcccctggagctattggatcaagaggtgac
cctggtctgcctgggcctaggggagagtttggtgaagagggccctaaaggagagagaggt
gatccaggtcttcaaggaccccctggaaatataactgatgtggaaatggagcatatgaaa
ggagagaagggagacagcggagacagaggggatccaggtcctacaggagctagaggagtt
agtggaacacctggagatcctggaatagctggaaaggatggaatgcctggttcaccagga
aaaccaggtgagaaaggtgattcaggactcccaggacaaacaggaccagatggacagccc
ggagtaaaaggcagcatgggagaaatgggattgccaggagtaactgggccgaaaggcagt
aaaggtattgctggtcagcctggccatcacggatttaagggtgattcaggatacaaaggt
gaaaagggaacagcaggtttgccaggattaggattgcctggccttcctggtgagaagggt
gaaatgggcccacctggttttcctggggattctggacaaaagggagtgaaaggttccatg
ggaatcccaggcatgcctggaataacaggacaaaaaggagacataggcgtgactggtcac
ccaggcaaccctggggtgccaggtgataaagggttacctgggttacctggatcaccagga
cagcctggtcttgaaggacggccaggtgaacctggtctgcagggtgccccagggccacaa
ggaaagaaaggagaggctggaaaagacggattccctggagccgctggagagaggggtgaa
ccaggtttacctggtagaggctttcctggaacccctgggcaagagggcacaaaaggtgaa
aaaggcaatccaggtccacctggcatgcctggagtctctggtattcccggttccaaagga
gagaagggcctgccgggattccaaggtagtcagggtcgacctggtgaaagaggactacca
gggccatcaatggaaggaccaaaaggcgatagaggatctcagggagagcctggagaacca
gggcagactggtgctccaggaccagcaggtgttccaggtagcgctggatttaaaggagag
agaggagaaaaaggttatccaggcatacagggtattgagggtttgaaaggcgataaagga
tacactggtcaacctggtgaacctggcttaccaggctataaaggagtaaagggtgaaatg
ggagttccgggtcctcctggcttccaaggactaaagggtgaccatggattgactggattc
aaaggagaggttggtgacagaggatttccaggagcaaaaggtaatgttggccctcctgga
cctcctggagaaactgtccttataaagggagacattggtttgccaggaccacaaggtccc
cagggtttcccagggcttcaagggtatcctggaacaaaaggactgcaaggattgactggt
acgcaaggttttaaaggagacgatggtataccaggatacaatggggttcctggaaataaa
ggagaacctgggcatggaggaccttccggtcccagaggttacccaggtcccccaggtcct
gatggtaccccaggtcaggttggccctcctggaccctcctccatggatcatggcttctta
gtgactcggcacagtcagtccattgaagtgccactgtgcccacaaggcaccactatgatc
tatgatgggtactcccttctgtacgtgcagggaaatgagcgatctcatggccaagacctg
ggtactgctggtagctgcttgaggaagttcagccccatgccgttcctcttctgcaacatc
aacaatgtgtgcaactttgcttctcgtaatgactattcctactggctcacatctcctgag
cccatgcctatgagcatggctcctatcactggcgagagcatcaaacctttcatcagcaga
tgtgcagtatgtgaggctcctgccatggtgattgctgtgcacagtcagactatagccatc
ccagcctgccctcaaggctgggtatctctatggattggttattcttttgtcatgcacacc
agtgcaggttctgagggctctggtcaggctctggcctctcctggctcctgtctggaggag
ttccgctcagctcccttcatcgagtgtcatggccgtggcacatgcaactactatgcaaac
tcatacagcttctggttggccaccatcgaggataatgagatgtttagcaaacctgtgccc
accacgctaaaggctggaaatctccgaactcacatcagtagatgtcaagtgtgcatgaag
aggacttag
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integrated database retrieval system
