KEGG   Clarias gariepinus (North African catfish): 128523929
Entry
128523929         CDS       T10780                                 
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128523929 (sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgar03041]
    128523929 (sf3b1)
   03036 Chromosome and associated proteins [BR:cgar03036]
    128523929 (sf3b1)
Spliceosome [BR:cgar03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    128523929 (sf3b1)
 Complex B
    128523929 (sf3b1)
 Complex C
   U2 SnRNP specific factors
    128523929 (sf3b1)
Chromosome and associated proteins [BR:cgar03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    128523929 (sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 T4_baseplate
Other DBs
NCBI-GeneID: 128523929
NCBI-ProteinID: XP_053352112
LinkDB
Position
5:15723142..15734929
AA seq 1314 aa
MAKIAKTHEDIEAQILEIQGMKAALQEEGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTTLLSQKKPGYHAPVAVLNSIPQSDEQYDPFADHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPHRSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPSSTPKKVSSWDQADSAAETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPAFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPYVRYELEYYL
NT seq 3945 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagatatcgaggcgcagatcctggagatccagggc
atgaaggcggcgctacaggaggaaggagaccagggtgtcggtctcgattccaccggctac
tacgaccaggagatctacggaggaagcgacagtcgttttgctggatatgtcacatctatt
gctgccaatgagcaggaggaagacgatgaggaagactcttcaacaactctgcttagtcag
aagaaaccggggtatcatgctccggtggcagtcctcaattccattcctcagtcagatgaa
cagtatgatccttttgctgatcaccgaccgcagaagatctcggatcgagaagatgagtac
aagagacgcaggcaaaagatgatcatctctcctgagcgtcatgacccttttgcagatggg
ggcaaaacgccagatcccaagatgcctcacaggtcgtacatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcagactgcagatggcagaaaaggcaaaatcaggg
gacctgaaagcagtcaatggttctgctgcgtctcaagctgccgctcccaaacgtaagcgt
cgatgggaccagactgctgaccagacaccaagctctactcccaaaaaagtgtccagttgg
gatcaggcagacagcgcagcggagacaccaggacacacacctggacacacaccatcaaac
agtcgctgggatgagacgcctggtcgtcccaagggtagcgagacccctggtgccacaccc
agtacacgcatgtgggaccccacacccagccacacgcctgctggtgctgcaacaccaggc
cgtgacacccctgggcacgccacacccggccacggtggtgccacgtccagcgtgcgtaaa
aaccgctgggacgagacgccaaagacagaaagagagacacctggccatggcagtggctgg
gctgagacacctcgtacagacagaggagatgaatctgtgggggagactccaactcctggt
gcaagcaaaaggaagtcccgttgggatgagacccctgccagtcagatgggctcctccacg
cctctgctcactcctggaaagacccctattggaacaccagctatgaatatggccacaccc
actccaggtcatttgatgagtatgactcctgagcaacttcaggcatggcgctgggagaga
gagatcgacgagcgaaatcgtcctcttaccgatgaggagctggatgccatgtttcctgaa
ggctacaaggtgctgcccccgccagcaggttatgtgcctattcgcacccctgcccgtaaa
ttgactgcaactccaacgccaatcggaggcatgactggcttccacatgcaggctgaagac
cgaaccaccaaacagatgaatgaccagccgtctggcaacctgcccttcctaaaaccagac
gacatccagtactttgacaaacttttggtggaggtggacgagtccactctgagtcccgag
gagcaaaaggagcgtaagatcatgaagcttcttctgaaaataaaaaatggcacccctccc
atgagaaaggctgctctcaggcaaatcacagacaaggccagagaatttggtgctggccct
ctcttcaatcagattctacccctgcttatgtctcctacgcttgaagatcaggagcgccat
ctattggtgaaggttattgatcgcatcttgtacaaactggatgatttggttcgtccgtac
gtccacaagatccttgtggtgatcgagcccttgctgattgatgaagattactatgccaga
gtagagggcagagagattatctccaacttggcaaaggctgctggtctggccactatgatt
tccacaatgaggcctgacattgacaacatggacgagtatgtgagaaacacaacagctcgt
gcctttgctgttgtggcttctgctttggggattccctccctattgcctttccttaaagct
gtgtgcaagagcaagaagtcgtggcaggctcgtcacacaggcattaaaattgtgcagcag
attgccatcctcatgggctgtgccatcctccctcatctccgcagcttggtagagattatc
gaacacggtcttgtggatgagcagcagaaggtacgaaccatcagtgctttggctattgct
gcgctggcggaggctgccacaccctacggtatcgagtcttttgactctgtgcttaagcct
ctttggaagggtatcagacaacacagaggcaagggtctggctgctttcttaaaagccatt
ggatacttgattcctcttatggatgccgagtatgccaactactacacaagggaagtgatg
cttatcctgattcgagagttccaatctccagatgaggaaatgaagaagattgtcttgaag
gtagtgaagcaatgctgtgggacagatggtgtggaggccaactacatcaaaacagagatt
ctgcccgctttctttaaacacttctggcagcaccgtatggccttggacagacgtaactac
agacagttagtagatactacagtagagctagccaacaaagttggtgcagcagaaatcatt
tcaagaatcgtggatgacttgaaggatgaagctgagcagtacagaaagatggttatggag
acaatcgagaagatcatgggtaacctgggtgcagcagacattgaccacaaactagaggag
cagcttattgatggaatcttgtacgctttccaagaacagaccacagaggactctgtgatg
ctaaacggttttggaacggtggtgaatgctctgggcaagcgagttaagccctacctgcct
cagatctgtggtactgtcctgtggcgtttaaacaataagtcagctaaagtccgtcagcag
gctgctgacctcatttctcgcacagctgtggttatgaagacctgtcaagaggagaaactg
atgggtcatttgggtgtagtgctgtacgagtacctgggagaagaataccctgaagtgctt
ggaagcatccttggagcccttaaagctattgttaacgtcattggtatgcacaagatgact
cctccaattaaggatttgcttcctcgtttgacacccatcctaaaaaacagacatgaaaag
gtgcaagaaaactgcattgatctcgtgggcagaattgctgacagaggtgcagagtatgtg
tctgccagggagtggatgcgaatctgttttgagctgctggagctgctgaaggctcacaag
aaggcaatccggcgagccacagtcaacacgttcggctacattgctaaggcaatcggacct
catgatgtccttgccacgctgcttaacaacttgaaagtgcaggagcgtcaaaacagagtt
tgtacaacagttgccatagccatcgtggcagagacatgctcacccttcaccgttctccca
gcactgatgaacgagtatcgtgtacctgaactaaatgttcagaatggtgtgcttaaatcc
ctctccttcttattcgaatatatcggtgaaatgggcaaggactacatttatgctgtcact
ccattattggaggatgcgctgatggacagagatcttgtgcatcgtcagacagccagtgct
gtggtgcagcacatgtctctgggtgtttatgggttcggttgtgaggactctctcaaccac
ttgctcaactatgtttggcctaatgtttttgaaacatcgccgcacgtcatccaagctgta
atgggagcgcttgagggactcagagtggctatcggaccatgccggatgttacaatattgc
ctgcagggtttgttccatcccgcacggaaagttcgtgacgtgtactggaagatttataat
tccatctacatcggctcccaggatgctctgattgcacattatcccctcgtctacaatgat
gagaagaacccatacgtgcgctatgagctggagtactatctgtga

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