Clarias gariepinus (North African catfish): 128523929
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Entry
128523929 CDS
T10780
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128523929 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128523929 (sf3b1)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128523929 (sf3b1)
Spliceosome [BR:
cgar03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128523929 (sf3b1)
Complex B
128523929 (sf3b1)
Complex C
U2 SnRNP specific factors
128523929 (sf3b1)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128523929 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
T4_baseplate
Motif
Other DBs
NCBI-GeneID:
128523929
NCBI-ProteinID:
XP_053352112
LinkDB
All DBs
Position
5:15723142..15734929
Genome browser
AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALQEEGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTTLLSQKKPGYHAPVAVLNSIPQSDEQYDPFADHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPHRSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPSSTPKKVSSWDQADSAAETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPE
GYKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPAFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPYVRYELEYYL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcgcagatcctggagatccagggc
atgaaggcggcgctacaggaggaaggagaccagggtgtcggtctcgattccaccggctac
tacgaccaggagatctacggaggaagcgacagtcgttttgctggatatgtcacatctatt
gctgccaatgagcaggaggaagacgatgaggaagactcttcaacaactctgcttagtcag
aagaaaccggggtatcatgctccggtggcagtcctcaattccattcctcagtcagatgaa
cagtatgatccttttgctgatcaccgaccgcagaagatctcggatcgagaagatgagtac
aagagacgcaggcaaaagatgatcatctctcctgagcgtcatgacccttttgcagatggg
ggcaaaacgccagatcccaagatgcctcacaggtcgtacatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcagactgcagatggcagaaaaggcaaaatcaggg
gacctgaaagcagtcaatggttctgctgcgtctcaagctgccgctcccaaacgtaagcgt
cgatgggaccagactgctgaccagacaccaagctctactcccaaaaaagtgtccagttgg
gatcaggcagacagcgcagcggagacaccaggacacacacctggacacacaccatcaaac
agtcgctgggatgagacgcctggtcgtcccaagggtagcgagacccctggtgccacaccc
agtacacgcatgtgggaccccacacccagccacacgcctgctggtgctgcaacaccaggc
cgtgacacccctgggcacgccacacccggccacggtggtgccacgtccagcgtgcgtaaa
aaccgctgggacgagacgccaaagacagaaagagagacacctggccatggcagtggctgg
gctgagacacctcgtacagacagaggagatgaatctgtgggggagactccaactcctggt
gcaagcaaaaggaagtcccgttgggatgagacccctgccagtcagatgggctcctccacg
cctctgctcactcctggaaagacccctattggaacaccagctatgaatatggccacaccc
actccaggtcatttgatgagtatgactcctgagcaacttcaggcatggcgctgggagaga
gagatcgacgagcgaaatcgtcctcttaccgatgaggagctggatgccatgtttcctgaa
ggctacaaggtgctgcccccgccagcaggttatgtgcctattcgcacccctgcccgtaaa
ttgactgcaactccaacgccaatcggaggcatgactggcttccacatgcaggctgaagac
cgaaccaccaaacagatgaatgaccagccgtctggcaacctgcccttcctaaaaccagac
gacatccagtactttgacaaacttttggtggaggtggacgagtccactctgagtcccgag
gagcaaaaggagcgtaagatcatgaagcttcttctgaaaataaaaaatggcacccctccc
atgagaaaggctgctctcaggcaaatcacagacaaggccagagaatttggtgctggccct
ctcttcaatcagattctacccctgcttatgtctcctacgcttgaagatcaggagcgccat
ctattggtgaaggttattgatcgcatcttgtacaaactggatgatttggttcgtccgtac
gtccacaagatccttgtggtgatcgagcccttgctgattgatgaagattactatgccaga
gtagagggcagagagattatctccaacttggcaaaggctgctggtctggccactatgatt
tccacaatgaggcctgacattgacaacatggacgagtatgtgagaaacacaacagctcgt
gcctttgctgttgtggcttctgctttggggattccctccctattgcctttccttaaagct
gtgtgcaagagcaagaagtcgtggcaggctcgtcacacaggcattaaaattgtgcagcag
attgccatcctcatgggctgtgccatcctccctcatctccgcagcttggtagagattatc
gaacacggtcttgtggatgagcagcagaaggtacgaaccatcagtgctttggctattgct
gcgctggcggaggctgccacaccctacggtatcgagtcttttgactctgtgcttaagcct
ctttggaagggtatcagacaacacagaggcaagggtctggctgctttcttaaaagccatt
ggatacttgattcctcttatggatgccgagtatgccaactactacacaagggaagtgatg
cttatcctgattcgagagttccaatctccagatgaggaaatgaagaagattgtcttgaag
gtagtgaagcaatgctgtgggacagatggtgtggaggccaactacatcaaaacagagatt
ctgcccgctttctttaaacacttctggcagcaccgtatggccttggacagacgtaactac
agacagttagtagatactacagtagagctagccaacaaagttggtgcagcagaaatcatt
tcaagaatcgtggatgacttgaaggatgaagctgagcagtacagaaagatggttatggag
acaatcgagaagatcatgggtaacctgggtgcagcagacattgaccacaaactagaggag
cagcttattgatggaatcttgtacgctttccaagaacagaccacagaggactctgtgatg
ctaaacggttttggaacggtggtgaatgctctgggcaagcgagttaagccctacctgcct
cagatctgtggtactgtcctgtggcgtttaaacaataagtcagctaaagtccgtcagcag
gctgctgacctcatttctcgcacagctgtggttatgaagacctgtcaagaggagaaactg
atgggtcatttgggtgtagtgctgtacgagtacctgggagaagaataccctgaagtgctt
ggaagcatccttggagcccttaaagctattgttaacgtcattggtatgcacaagatgact
cctccaattaaggatttgcttcctcgtttgacacccatcctaaaaaacagacatgaaaag
gtgcaagaaaactgcattgatctcgtgggcagaattgctgacagaggtgcagagtatgtg
tctgccagggagtggatgcgaatctgttttgagctgctggagctgctgaaggctcacaag
aaggcaatccggcgagccacagtcaacacgttcggctacattgctaaggcaatcggacct
catgatgtccttgccacgctgcttaacaacttgaaagtgcaggagcgtcaaaacagagtt
tgtacaacagttgccatagccatcgtggcagagacatgctcacccttcaccgttctccca
gcactgatgaacgagtatcgtgtacctgaactaaatgttcagaatggtgtgcttaaatcc
ctctccttcttattcgaatatatcggtgaaatgggcaaggactacatttatgctgtcact
ccattattggaggatgcgctgatggacagagatcttgtgcatcgtcagacagccagtgct
gtggtgcagcacatgtctctgggtgtttatgggttcggttgtgaggactctctcaaccac
ttgctcaactatgtttggcctaatgtttttgaaacatcgccgcacgtcatccaagctgta
atgggagcgcttgagggactcagagtggctatcggaccatgccggatgttacaatattgc
ctgcagggtttgttccatcccgcacggaaagttcgtgacgtgtactggaagatttataat
tccatctacatcggctcccaggatgctctgattgcacattatcccctcgtctacaatgat
gagaagaacccatacgtgcgctatgagctggagtactatctgtga
DBGET
integrated database retrieval system