Clarias gariepinus (North African catfish): 128523973
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Entry
128523973 CDS
T10780
Symbol
edar
Name
(RefSeq) tumor necrosis factor receptor superfamily member EDAR
KO
K05162
tumor necrosis factor receptor superfamily member EDAR
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
128523973 (edar)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
cgar04050
]
128523973 (edar)
Cytokine receptors [BR:
cgar04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
128523973 (edar)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Death_EDAR
TNFR_c6
Chordopox_G3
SpoIIIAH
Motif
Other DBs
NCBI-GeneID:
128523973
NCBI-ProteinID:
XP_053352199
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Position
5:complement(328316..356557)
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AA seq
462 aa
AA seq
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MARKTPAVESCLLSFLLVSSVYPLRAEYSSCGENEFYNHSSSSCRPCPQCQPGREPYMNC
GYGVKDEDYDCVSCPPGKFSRGKYEICRRHKDCNALYRATVLTPGTRDSDAECGPCLPGY
YILENRPRNIYGMVCHSCQNAPRNTKECMRTTPVTSHRGSGTSSTSTTTFPHAEKDPTGQ
GHLATALIIAMSTIFIMSIAIVMIIMFYILKAKPSGQACCSGQMVKTVEAPANKQEEKKE
AQENAVIFTEKDEFKPPPTKPVKSENDASSENEQLLSRSIDSDEEAAQEKQGATDLCLLS
LVHLTRDKACSGNTVNNNNTVNNNNTSSSRTVGIHSRRKKILELYARACGVAEGMSPVEL
PFDCLERTSRMLSATYSAEKALVRTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSI
PDLLARLVQIERLDVVEALCLDILGAPPSVQHLTITSRCASV
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaagacaccggcggtggagtcttgcctgctttcattcctgctggtctccagt
gtgtacccgctgagagctgaatactccagctgtggagagaatgagttttataaccacagc
agcagcagctgtcggccgtgtccacagtgccaaccgggccgggagccgtacatgaactgc
ggttacggggttaaggatgaggactatgactgtgtgtcctgccccccggggaagttctcc
cggggcaaatacgagatctgccgtcgccataaagactgtaatgcgctgtacagagccacg
gtgctgacacccggcaccagggacagcgacgcagagtgtggaccctgtttacctgggtac
tacatcctggagaaccgtcccaggaacatctacggcatggtgtgtcactcctgccagaac
gctccaaggaacaccaaagagtgtatgcgaacgacaccagttacatcgcaccgtggctcg
ggaacatcgtccaccagcaccactacgttcccccatgcagaaaaagatccaacagggcaa
ggtcacctagcaacagcccttatcatcgccatgtcgaccatctttatcatgtctatcgct
atagtgatgatcatcatgttttacatcctgaaagctaagccgagtggccaagcatgctgt
tcaggccagatggtaaaaaccgtagaggctccggcgaacaagcaggaagagaagaaagaa
gcccaagagaatgctgtaatttttacagaaaaggatgagttcaagcctcctccaacaaaa
ccagtgaaaagtgaaaacgacgcgtcgtctgagaacgagcagctgctgagccgcagcatc
gacagcgacgaggaagcggcgcaggaaaaacagggagccaccgacctctgcctgttgtct
cttgttcatctgactcgcgacaaggcctgctcgggcaacaccgtcaacaacaacaacacc
gtcaacaacaacaacaccagcagcagcaggaccgtggggattcacagccgaaggaaaaag
atcctggagctgtacgccagagcgtgtggtgtggccgagggcatgagtccggtcgaattg
ccttttgactgcctggagcgaacgagccgcatgctgagcgccacctacagcgcggagaag
gcgttggtcaggacctggcgtcacctggctgagagcttcggattaaaacgggacgagatc
ggagggatgactgacggcatgcagctgttcgaccgtatcagcacggccggatacagcatc
ccggacctgctcgctcgactcgtccagatcgagaggctggatgtggtcgaagcactatgc
cttgatattctcggagcgcccccttctgttcagcatctgacgattacttcacgttgcgct
agcgtttaa
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