Clarias gariepinus (North African catfish): 128524187
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Entry
128524187 CDS
T10780
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgar04147
]
128524187 (col18a1a)
00535 Proteoglycans [BR:
cgar00535
]
128524187 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
cgar00536
]
128524187 (col18a1a)
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128524187 (col18a1a)
Proteoglycans [BR:
cgar00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128524187 (col18a1a)
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128524187 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
128524187
NCBI-ProteinID:
XP_053352572
LinkDB
All DBs
Position
5:complement(31234283..31322014)
Genome browser
AA seq
1637 aa
AA seq
DB search
MLNKMPSLGLWLGVLVGLCIGHSQGWLWFNSPKDDSKSTQTPAYFTTLGTTFPTSVPATE
SLRTEGTSASGVDVLTKGEEMRQSRAGSAGNEQSKAEVEHGSGLESDSGSGSWSLSGTVV
EPESGPTPATLSALLEKQELNTVQINLSTVGDTFHVLAEDTKLQMNLTKADVSQMDEHIA
KAAGSPGDPITTVDRGVSLSQLIGFPLPDGVTKSYDPDPGFVFDMNSKTGQLARAHLPAS
FYRDFSLMFNLKPTSTKPGVIFSITDTQQKIMYVGVKLTATKDGKQNIVLFYTEPDSQAS
YEAASFTVPSLFNYWNRFSISVLDDQVTLYPSCDSEPQTKPFERSPDEMELEAGAGLFVG
QAGGADDDKFVGIIGDLKVVGDPRAAERYCEEEEDDSDGASGDYGSGDYENKPTVSITSQ
PSKPLQQPPVHPTVVTVSKDVAKGSVDGYGRISGSYGDSRGTSGSHGNSGRLSVSYEDSF
GTSDNSHRTFGSYDNSDLTSDIHDDSRRTSVSVGGTRTSGLIHGSRQTSDRTADSSSGKV
IGLSDVSRHTHTVSTGGRGVSGSSVERGYSVDLRPGISSSEVLTATGARGEKGQKGEQGP
KGDRGPEGPKGDGGSRTGSGGGAKGEKGSPGEKGMKGAAGFGYAGQKGDQGPPGPAGPPG
PPGPSAEIVERGDGTVMQRVAGPKGPPGPPGPPGPAGPEGEAGDPGEDGKAGPPGLPGFP
GTPGDTGAKGEKGDKGEGHPGPRGPPGPPGPPGPPSRSDRPTFVDMEGSGFGDLEGLRGL
PGLPGLPGPPGPPGPAGPIGPANVLNASVPGVPGPAGPPGKDGAPGQPGLPGLQGADGKP
GLPGPKGEKGDTGALGLPGAVGEKGAQGPPGSPGQPGQTGLAGLPGPMGPVGPPGPPGPS
YHAGFDDMDGSGISIFDNVPGVRGPEGIRGPPGLPGQPGIPGQKGEKGNVGLQGKAGHHG
LDGFPGPEGPQGERGMKGDKGDPGRDGVGHPGPPGPPGPPGEIIHKSTDGSGIPGQAGFP
GPIGPKGERGDPGAPGHGIKGEKGEPGVVIGPDGSPLFLGSGVGQKGERGPPGPVGPPGA
YGSPGMKGEIGMPGRPGRPGIFGGKGEKGEPGTGSAYGYPGPPGPPGPPGPPGPSTYATA
VDRFGRYDESERVYPGAKGEKGDRGIPGLPGTPGNIDIYALKHELKGERGDPGMKGEKGE
PGGHYGPHYEGVQGPPGPPGPKGDSIRGPPGPQGPPGSPGVGYDGRPGNPGPPGPPGPPG
SPSLPGAHRPTISIPGPPGPPGPAGLPGQNAGVIILRTYDLMLATAQRQPEGALIYVLDK
TDLYIRVRDGFRQVMLGTYNPFYRDSNNEVAAVQPPPVVHYPSSHPTNNGAGDYAHVVDP
AVRQPESPVSEHPQPVVDPPYNPPYSSHPDIRYPPQPDHRYPSYPDHQYVPVQPERYPST
PIHRPSTPVHQPEDHVHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAAGLKGTFR
AFLSSRLQDLYSIVRKSDRDTLPIVNLKDQVLFSSWESLFGDSEGRMKTNVPIYSFDGRD
IFRDSAWPEKMIWHGSNGKGHRQMDNYCETWRTSDHAVMGLASSLQAGQLLQQKASSCSS
NFIVLCVENSYITQFKK
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgccttcgcttggactgtggcttggtgtgctggtaggactgtgcatt
gggcactcgcaaggatggctttggttcaatagcccaaaggacgacagcaagagcactcag
acaccagcctattttactactttaggcacaacttttccaacaagtgtacctgcaacagaa
tccctgaggacagaaggcacatctgcttcaggtgtggatgtccttactaagggtgaggag
atgaggcaatctagagctggatcagccgggaatgagcagtcaaaagcagaggtagagcat
ggttctgggttagagtctgactctggatctggatcatggtctctttctgggactgttgtt
gaacctgaatccgggcctacacctgccactttgtctgctttgctggaaaaacaggaactt
aacactgttcaaatcaatttgtctactgttggggatacttttcatgttcttgcagaggat
actaagctgcagatgaatctgaccaaagcggatgtctcccaaatggatgaacacattgcc
aaggctgctggttcccctggtgaccccattacgacagtggatagaggtgtgtcactctca
cagctgattggtttccctcttcctgatggtgtcaccaagagttacgacccagaccctggc
tttgtgtttgatatgaactccaagactggtcagctggctcgtgcacacttgcccgcatcg
ttttaccgtgacttctctctcatgttcaacctcaaaccaacttccaccaaacctggagtc
atcttctcaatcacggacacccaacaaaaaatcatgtacgtgggggtgaaacttacagcc
acgaaggacggaaagcagaatattgttttgttctacactgagccggactcccaggcttcc
tacgaggctgcaagctttactgttccctcccttttcaactactggaatcgtttctctatc
agtgtcttggatgatcaagtcaccctgtaccccagttgtgattcagagccacagacgaag
ccgttcgagcgctccccagatgaaatggagctggaagcaggggctgggctctttgtgggt
caagctggaggtgctgatgatgacaagtttgtgggtattattggagatctgaaggtagtt
ggggaccctcgtgcagctgaacggtattgtgaggaagaagaggatgattccgatggggcc
tcgggtgattatggaagtggtgattatgaaaacaagccaacagtctcgatcacaagccaa
ccttccaaaccactacagcagccgccagtgcaccctactgtggtaacagtgagcaaagat
gtggccaaaggctcagttgatggctatggacgaatttctggctcatacggtgattctcgt
ggaacatctggctcacatggtaattctggaaggttgtctgtctcatacgaagattctttt
ggcacttccgacaattcacaccgaacatttggctcgtatgacaattctgatttaacatct
gatatacatgacgattcccggcgtacatctgtctcggtcggtgggacacggacttcaggc
ttaatccacggtagcaggcaaacctccgaccgaaccgccgattcaagctctgggaaagta
ataggtttgtctgatgtctcccgacatacacatactgtgagtactggaggtcgaggagtt
tcggggtccagtgttgagagaggctactctgtggatctgaggcctgggatttccagctcc
gaagtgcttacagcaacaggagctcggggagaaaagggtcaaaaaggggagcaaggacct
aaaggagatcgtggccctgagggccccaagggagatggagggtctaggactggctctgga
ggcggtgccaaaggagagaaaggtagcccaggagaaaaaggaatgaagggtgctgcagga
tttggctatgctggacaaaaaggtgaccaaggacctcctggtcctgctggtcctcctggt
cctcccgggccgagtgctgagatagtggaaaggggagacggcacagtaatgcaacgtgtt
gcaggaccgaagggaccaccaggacctccaggacctccggggcctgccggaccagaagga
gaagctggtgaccctggtgaagatggaaaagccggaccacctggactacctggtttccca
ggaacccctggagatactggagctaaaggagaaaaaggtgacaagggtgaaggtcaccct
ggacccaggggaccaccaggacctccgggacctccaggaccaccttctcgctcagacaga
cctacatttgtggacatggagggctctggctttggtgatctagaggggctgcggggattg
cctggtttgcctggtcttcctggcccaccaggcccacccggacccgcaggacctataggt
cccgctaatgttttaaatgcttctgttcctggtgtacccggacctgctggcccacctgga
aaggacggtgctccaggacaaccgggacttccaggcctccagggtgctgacggaaaaccc
ggcctgcctggccctaaaggagagaagggtgataccggtgcgctcggcttacctggagct
gtgggagaaaagggtgcacaagggcctcctggttctccaggacaacccggacagactggc
ctggctggccttccaggaccaatgggacctgtcggaccacctgggcctccagggccaagc
taccatgctggatttgacgacatggatggttcaggtataagcattttcgataatgtacct
ggagtcagaggacctgaaggcatacggggtccacctggcctgccaggtcagcctggaatt
cctgggcaaaaaggagaaaaaggcaatgtgggacttcaaggaaaagctggccatcatggg
cttgatggctttcctggacctgagggaccccagggagagcgtggaatgaaaggagataaa
ggtgatccaggtcgtgatggtgttggccatccaggccctccagggccacctggacctcca
ggagaaattatccacaagtctacagatggctctggcatccctggtcaagcaggattccca
ggcccgattggaccaaagggtgagagaggagacccaggtgctccaggtcatggaattaag
ggcgagaaaggagaacctggtgtggttattggacctgatggaagtcctttattcctcggt
tcaggtgttggtcaaaagggggaaaggggacctcctggaccagttggacctcctggagca
tatggttctcccggcatgaagggcgagatcggaatgccaggcaggcctggacggccaggt
atatttggaggtaaaggtgaaaaaggagagccgggtactggatcagcatatggttatcct
ggtccacctggacctccaggtcctcccggtcccccaggaccctcaacatacgctacagct
gtagacagatttggtagatatgacgagtctgagagagtgtatccaggtgctaaaggagag
aaaggagatcgtgggatccctggtcttcctggcacaccaggcaacattgacatttacgct
ctgaagcatgagttgaagggtgaacgtggagaccctggaatgaaaggagagaagggagag
ccaggtggacactatggtcctcactatgaaggtgttcagggaccaccaggacctcctggt
cctaaaggagattctatcagagggcctcctggtccgcagggtccaccaggatctcctggt
gttggttatgatggccgtccaggaaacccaggaccaccaggacctcctgggcctcctggt
tcaccctcattacctggggctcacaggcctacaatcagcattcctggtcctcctggtcct
cctggcccagctgggttgcctggccaaaacgctggagtaataatactgagaacctatgac
ttaatgctcgcaacagcgcagagacaaccggagggtgctctcatctacgtattagacaaa
accgatctctatatcagagtgcgtgatggcttcagacaagtcatgcttgggacttataac
cccttctacagagattcaaacaacgaggtggcagcggtacagcctcccccagtagtgcat
tacccttccagccacccaacaaataacggagcaggggattacgctcatgttgttgaccct
gcagtcaggcagccggagagccctgtgagcgagcatcctcagccagtcgttgatccacct
tacaacccgccgtactcctctcacccagacatcaggtacccacctcagccggaccacaga
tatccgtcctaccctgatcatcagtacgtccctgttcagccagagagataccccagtacc
ccgatccacagacccagcacacccgtccatcagcctgaggatcatgtgcacacatcagga
ccagggctgcatctgatcgccctgaacagccctcaggtagggaacatgaggggcattcgt
ggcgcagacttcctgtgcttccagcaggcacgtgctgcaggcctgaagggaacattcagg
gctttcctgtcctccagactgcaggatctctacagcatcgttcgcaaatccgacagagac
acattgcctattgtcaacctcaaggaccaagtgctgttcagcagctgggaatcgctgttc
ggtgattcggagggcaggatgaagaccaacgtacctatatattcatttgatggcagagat
atctttagggacagtgcttggccagagaagatgatctggcacggctccaacggtaagggt
caccgtcaaatggataactactgtgagacatggaggacgtcggatcatgccgtgatgggt
ctggcttcgtctctgcaggccggccagctcctacagcagaaagccagtagctgctccagc
aacttcatagtgctgtgtgttgagaacagctacatcacacagtttaagaagtaa
DBGET
integrated database retrieval system
