Clarias gariepinus (North African catfish): 128524272
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Entry
128524272 CDS
T10780
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128524272 (upf3a)
03015 mRNA surveillance pathway
128524272 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128524272 (upf3a)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128524272 (upf3a)
mRNA cycle factors
P-body specific factors
128524272 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
PagP
Motif
Other DBs
NCBI-GeneID:
128524272
NCBI-ProteinID:
XP_053352735
LinkDB
All DBs
Position
5
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AA seq
482 aa
AA seq
DB search
MRAEKEPTTGSRERGVVEIQLRDAHREQDSAAANLKHKEEKKEIFTKVVIRRLPPSLSKE
QLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDIVLFRDRFDGYVFIDNKGQ
EYPAIVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKDIKIKLLKKCDRDDEVESDRLKDKGDSGETERNKWDKSSGHTKAK
EPKDSRVQLESDKEQRDGHSRRQRDKDQRCREEERKRQRHHYEFDKFMRRKEETKWGKGY
CHDRAKKDGHHHGYSYCPEMGDKSSKEDRDEMGSRKERIRNKSVLVHQEKRTSQSEGPDQ
IGGALPAKDRPAMQLYQPGARNRKHVGSGNKGFDFSRLSPEPISEPCYELTIGTGSEKSG
DE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgagaaggagccgacaacgggaagcagagagagaggcgtcgtcgagatacag
ctgagagacgctcacagggagcaggacagcgccgcggccaatttaaagcacaaagaggag
aaaaaggaaatcttcaccaaggttgtgattcgacgtcttccaccgagcctatcaaaagaa
cagcttgaggagcatctcagtccactaccttcttatgactattttgagttttttcctgca
gatcaaagcctatatccacatcttttctccagagcatacatcaactttaaaaacccagag
gatattgttctattcagagatcgtttcgatggttatgtttttattgataataaaggtcaa
gagtatccagcaattgtagaatttgcaccatttcagaaggtttccaagaagaagctcaag
aaaaaagatgccaaggccggaagcattgaagaagatccagaatacagaagatttctggag
aactactcatgtgatgaggagaagtcaatggccaatccagaaacactgttgggagaaatt
gaggctaaaacaagagagctaatagctaaacggacaacaccacttctggaatatattaag
aacaagaagttggaaaagcagagaattcgggaggaaaaaagggaggagaggagacgccgg
gaactagaaaagaaacgccaaagggaagaggagaaaaggaaacggcgagaagaggagagg
cgaaaacgcaaagaagcagagaagcagaagaagctgtctgaaaaggatatcaaaattaag
cttttaaagaaatgtgacagggatgatgaggtggaatcagacagactaaaagacaaagga
gacagtggagaaactgagaggaacaagtgggacaaatcctcaggtcacactaaggcaaag
gaacctaaagacagtagagttcagctagaaagtgataaggagcagcgggatggccacagt
cgccgacagagagataaagatcagaggtgcagagaagaggagcgcaagcggcaacggcat
cattatgagtttgacaaattcatgcggcgcaaggaggagaccaaatgggggaaaggctac
tgtcatgaccgggcaaagaaagatggccatcaccatggctactcctactgcccagagatg
ggggataagtcaagcaaggaggaccgggatgaaatggggagcagaaaggaacgtatacgt
aataagtctgtattagtgcatcaggagaaaaggacctcccagtctgaggggccagaccag
ataggaggggctctgccagccaaggaccgacctgccatgcagctgtaccagccaggagcc
cgtaaccgtaagcatgtggggtctgggaacaaaggctttgacttcagccggctctctcca
gagccaatcagtgaaccctgctatgagctgaccataggaacaggctctgagaaaagtgga
gatgagtga
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