Clarias gariepinus (North African catfish): 128524317
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Entry
128524317 CDS
T10780
Symbol
hspd1
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128524317 (hspd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128524317 (hspd1)
03110 Chaperones and folding catalysts [BR:
cgar03110
]
128524317 (hspd1)
03029 Mitochondrial biogenesis [BR:
cgar03029
]
128524317 (hspd1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgar04147
]
128524317 (hspd1)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
128524317 (hspd1)
Messenger RNA biogenesis [BR:
cgar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
128524317 (hspd1)
Chaperones and folding catalysts [BR:
cgar03110
]
Heat shock proteins
HSP60 / Chaperonin
128524317 (hspd1)
Mitochondrial biogenesis [BR:
cgar03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
128524317 (hspd1)
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128524317 (hspd1)
Exosomal proteins of other body fluids (saliva and urine)
128524317 (hspd1)
Exosomal proteins of breast cancer cells
128524317 (hspd1)
Exosomal proteins of colorectal cancer cells
128524317 (hspd1)
Exosomal proteins of bladder cancer cells
128524317 (hspd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
128524317
NCBI-ProteinID:
XP_053352808
LinkDB
All DBs
Position
5:15703618..15709225
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AA seq
574 aa
AA seq
DB search
MLRLPSLMRQMRPVCRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
TVIIEQSWGSPKVTKDGVTVAKSIELKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
RAIAKEGFDTISKGANPVEIRRGVMLAVETVINELKKLSKPVTTPEEIAQVATISANGDT
EVGAIISNAMKKVGRKGVITVKDGKTLHDELEIIEGMKFDRGYISPYFINTAKGQKCEFQ
DAYVLLSEKKISSVQSIVPALEIANQHRKPLVIVAEDVDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLKDMAIATGGTVFGDEAVGLAVEDIQAHDFGRVGEVVVTKDDTMLLKG
RGDPSAVEKRAAEIAEQLETTTSDYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
VTDALNATRAAVEEGIVLGGGCALLRCIPVLDTIKPVNDDQKIGIDIIRRALRIPAMTIA
KNAGVEGSLVVEKILQSGNEVGYDALNNEYVDMVEKGIIDPTKVVRTALLDAAGVASLLS
TVEAVVVELPKEEKEMPGGMGGMGGMGGMGGMGF
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcttgcccagtttgatgaggcagatgaggccagtgtgcagggctctagcacca
cacctcacccgtgcctatgccaaggatgtaaagtttggagcagatgcccgggcgctcatg
ctccagggagtggacctgttggcagatgccgtggctgtcactatgggaccaaagggtcgc
acagttatcattgagcagagctggggcagcccaaaggtcaccaaagatggagtaacagtt
gccaagagcattgaactgaaggacaagtacaagaacatcggggccaagctggtacaggat
gtggctaataacacaaacgaggaggcaggtgacggaacgaccaccgccactgtactggca
cgtgccattgccaaggagggcttcgacaccatcagcaaaggcgccaaccccgtagagatc
cgcagaggagtcatgctcgctgtggaaactgtcatcaacgagctgaagaagctgtccaaa
ccagtcactacacctgaggaaattgctcaggtggccaccatttctgccaacggagacact
gaagttggtgcgatcatctccaacgccatgaagaaagtgggacgtaaaggagttatcacc
gtaaaggatggcaaaaccctgcatgatgagctggagatcattgaaggcatgaaatttgac
cgtggctacatctccccgtactttatcaacacagctaaaggtcagaaatgcgagttccag
gatgcctatgtgctgctgagcgagaagaagatctcaagcgtccaaagcatcgttccagcc
ctggagattgctaaccagcatcggaaacccctggtcattgtggcggaggatgtggacgga
gaggccctaagcactctcgtgctcaacaggttgaaggttggactgcaggttgtggcagta
aaggccccaggtttcggagacaacagaaagaaccagctaaaagacatggcaattgctact
ggaggaacggtgttcggagacgaggctgtcggcttggctgtcgaagacatacaggcgcac
gatttcggccgcgttggcgaggtggtcgtgaccaaggacgacaccatgctgctaaagggc
cgcggtgacccatctgccgtcgagaagcgtgcagctgagattgccgagcagctggagacc
accaccagcgattacgagaaggagaaactcaacgagcgcctggccaagctctctgacgga
gtggctgtactcaaggttggtggaacgagtgacgtggaggtgaacgagaagaaggacaga
gtaactgacgccctgaacgccactagggcggctgtcgaagagggcattgttctcggaggt
ggctgtgctctcctgcgttgcatccctgtcctggacaccataaaacctgtcaatgatgac
cagaagatcggtatcgacatcatccgtagagcactgcgtattcctgccatgaccattgct
aagaatgcaggagtagagggttctctggtggtggaaaaaatccttcagagcggaaatgag
gtcggctatgatgcccttaacaacgagtacgtcgacatggtggaaaaaggaattattgac
cctacaaaggtggtaaggacagcactgctggacgctgctggtgtcgcatctctgctctcg
acagtggaggctgtggttgtagagcttcctaaggaggagaaggaaatgccaggaggcatg
ggtggtatgggtggaatgggaggcatgggtggtatgggattctaa
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