Clarias gariepinus (North African catfish): 128524379
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Entry
128524379 CDS
T10780
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128524379 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128524379 (ddx3xa)
03041 Spliceosome [BR:
cgar03041
]
128524379 (ddx3xa)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128524379 (ddx3xa)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128524379 (ddx3xa)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128524379 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
128524379 (ddx3xa)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128524379 (ddx3xa)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128524379 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
128524379
NCBI-ProteinID:
XP_053352910
LinkDB
All DBs
Position
5:21621101..21637319
Genome browser
AA seq
767 aa
AA seq
DB search
MSHVAVDGLDQQLSALDLNSADGQGGGTGRRYIPPHLRNKDAGKNAGNAYSSSRQSGYSV
PPVLSCCPRYPSQELSFYHTYGGGWPDRCDSPGWDAGRTNCFVNGFHDNRMNGAGNFNRG
PPRNDRTGRGSFRGTRGGGTFNQPMHNTTYSGFDNKDGGWNTALNRDAYSSFGGRADRGK
SAFFNDRGTSSRGRYERGGFSTGGGMGNSRWVEESRDEEDWSKPTPPNERLEHELFSGSN
TGINFEKYDDIPVEATGSNCPGPIENFHDVDMGEIIMGNITLSRYTRPTPVQKHAIPIIK
AKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQASKTSGQENGKYGRRKQYPISLV
LAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRELERGCHLLVATPGRLVDMM
ERGKIGLDYCSYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGARQTMMFSATFPKEIQI
LARDFLEEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATVIPSEVQENATET
PERPGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPI
MVATAVAARGLDICNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITK
DLLDILVEAKQEVPSWLESLAFEHQHKNSTRGRSKRFSGGFGARDYRQMAAGGNSFGNRG
ARNAGGHGGNRGFGGNKGGFGNFVSDGYGGSYGNYGGNYTQVDWWGN
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgacggtctagatcagcagctttctgccctagacttgaactct
gcagacggtcagggtggaggtactggcaggcgttacattcctcctcacttgagaaacaaa
gatgctggtaaaaatgcaggaaatgcttattcctctagtagacagagcggttattcagtg
ccaccagtactgagctgttgcccaagatacccatctcaggagctttccttctatcacacg
tatggtggtggctggccagacagatgtgattctcctggatgggatgctgggcgtaccaac
tgctttgttaatggatttcatgacaatcgcatgaatggggctggaaactttaatcgtggc
ccccctcgcaatgataggactggccgcggcagctttcgcggaactaggggtggtggtacc
ttcaaccaacccatgcataacacaacctacagtggctttgataacaaagatggaggttgg
aacacagctttgaacagggatgcttactccagcttcggtggacgagctgatcgagggaag
tctgcctttttcaatgacagagggacaagctcaaggggaaggtatgagcgcggggggttt
agcactggagggggaatgggaaacagtcggtgggtagaagagtccagggatgaagaggac
tggtcaaagcctactccacccaatgagcgtctggaacatgagctgttctctggaagtaac
acagggattaactttgagaagtatgatgacattcctgtggaggccactggcagcaattgc
cctggccctattgagaatttccacgatgttgacatgggggaaattataatgggtaacata
actctgagccgctacacccgtcccacccctgtgcagaagcatgccattcccatcatcaag
gccaagcgggacctaatggcctgcgctcagactggctctgggaagactgctgcttttctg
ctcccggtgttgagtcagatctatactgatggaccaggagaggctttgcaagcttctaaa
accagcggccaggagaatggaaaatatggccgccgtaagcagtatcccatctctttggtc
ctggctccaaccagagaacttgctctacagatctatgatgaagccaggaagtttgcatac
cgctccagagtgcgcccatgtgtagtatatggaggtgctgacattggccagcagatccgg
gaactggagaggggctgtcacctgttggtggccactccaggacgtctggtagacatgatg
gagcgtggcaagattggccttgactattgcagttacctggttctggatgaggctgaccga
atgctggacatgggttttgagccacagatcagacgtattgtggagcaggacaccatgcca
ccaaaaggcgcacgccaaaccatgatgttcagtgccacctttcccaaggagattcagatc
ttggctcgtgactttttggaggagtatatcttcttggctgtgggtcgtgtaggctccacc
tcagaaaacattacccagaaggtggtctgggttgaggagagtgacaagcgctcgttcctg
ctggatctgctcaacgccacagtcattccaagtgaggttcaggaaaatgcaactgaaact
cctgagaggccaggaaaagattcccttacactggtgtttgtggagactaagaagggggca
gatgcgctggaagacttcctgtatcgggagggctatgcttgcaccagcatccacggtgac
cgctctcagagggatcgagaggaggcgcttcaccagttccgctcgggacgttgccccatt
atggttgcaacagctgtggctgcccgtggtctggatatctgcaacgtgaagcatgtcatt
aactttgacctgccaagtgacatcgaggagtacgtccatcgcattgggcgcactggacgt
gtgggaaacctcggtttggccacctctttctacaatgacaaaaacagtaatatcaccaag
gacctgctggacatcttggtggaggcaaaacaggaggttccttcttggctagagagcttg
gcctttgagcaccagcacaaaaacagcacccgaggacgctccaagaggttctctggtggt
tttggagccagggattaccgtcagatggctgcaggtggtaacagctttggcaaccggggt
gctcgtaatgcaggaggccatggagggaacagaggttttggtggtaataagggtggcttt
ggaaattttgtcagtgatggctacgggggaagttatggaaactacggaggaaactacacc
caagtggactggtggggcaactaa
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