Clarias gariepinus (North African catfish): 128524585
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Entry
128524585 CDS
T10780
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128524585 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
128524585 (acin1b)
03015 mRNA surveillance pathway
128524585 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128524585 (acin1b)
03041 Spliceosome [BR:
cgar03041
]
128524585 (acin1b)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128524585 (acin1b)
Spliceosome [BR:
cgar03041
]
Complex C
Other components
EJC/TREX
128524585 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
128524585
NCBI-ProteinID:
XP_053353194
LinkDB
All DBs
Position
1:complement(22777068..22802394)
Genome browser
AA seq
1690 aa
AA seq
DB search
MAELEDVTLDGKPLHSLRVADLKAALEQRGLAKSGQKTALIKRLKGALMLESLQRTSTSH
SGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRMEREAREAAEADDTDSPAGPEEDDHTA
ANDSTSYPPDKHHVVASQPSVPEDGGGDQLGPQDPVALGGHRLDAGTASVSHDPPDVPTA
KIWRPSFSQEEVATPSPPRAVASLSVRVVGQPERQGVPLIVPRPQQREGTAPVEAGPAHP
MPHLSQSARTQEDSDEDDDDDDDDSDEDDDWGPSSRGRKNVHTPPAQRSRRKLQPPQHIP
PHHSPLQLRQPTPPPSPPPELSFPLPDTPKQSPPEQDEPEAPEGAAVSSPVSLQRQESSS
SSRSSSPEPPSLRRPGPLSLLVRKMESEGAFDGGQKKDEEEEGDATAATGEQVEPGSGVL
VFSKGGNDDDHTSCDPEMLPDHQDSLQEQLPKGPESLPIMPSITESSPQESVEMKEAEDE
QEESSQPDEEEEQDDQEESSEEKEKVTDENFNASSWQRERETSPSQDSHDFQRTSHPPSP
PAPARRARVFSEVPPPECLISPSKPEPVSILTSGPEHADVEMETEAPTLPPQSSPEKEQE
ETLEAEAEKKEPAEAVEATEDSPSSLPPSPPPEEVKAEIETEKPMEKESEVPAEEESEVP
AEGESEVPAKGESEVPAERESEVPAEGESEVPAKGESEVPAERESEVPAAEESQVPAAEE
SQVPAAEESQVPMERKSEAERESEVPAVEKSEVPEVEKGEVPAVEKGEVPAVEKSEVPAA
EESEVVAERKSEAERESRVPTAEESVVPTAQRESEAEKESEVPAAEESKVPADRQREKST
DRESEIPSKRVKERSAERKRERSAERRREKSAEQRRERSTERKRKRSTERGRERSSERKR
ERSSERKRERSSERKRRRSAERVRERSAERKRKRSPERGGRERSTERGRERSAERKRKRS
AERVRERSEERRRKRSMEREKERSAEREKEQSAERGRGRSAEKDRRRSTEREKETSTAGE
RSTERGSAKSTEREKSPERASSQSSSSDSDSESSSSSSSGSSPQRKPSPPRQNQDEKKAS
SPDDASEEKEEHLRDVKQATVAEPTGPVSMELQEQPESESALAHPASQEVPETSESRPDE
STTPKAFAARKISLTTAKPEGAAVEAESGGGAGRKRRWGSSTAVTAKKPSISITTESLKS
LIPDLKPLQEAVVDLHPDEGRFSGDEDSAQQPERDEDQGLQIRRTVTQVVPAESQENGQK
EKEEDEDEEEEQAEVEKEKPPKKQRRESSSEVAMETQECDNKKVTLNDSVVRRSISQQKV
AVSITIDDPVRTGRQLSPPRGKASNIIHVCNLVRPFTLGQLKELLNRTGAVVEDGFWIDK
IKSHCYVTYSSTEEAVATREALHGVKWPSSNPKVLRVDFCEQKELDFHKGLLTEDPRAAV
APNRPAAPPPLMPPAREKEREKEREKDGAAPNVRDQWAEREREMERRERTRSEREWDRDK
VRDFPRDEREAARRSRSRDRDRRRKERGKSKERKTEKKDKPEEPPAKLLDDLFRKTKAAP
CIYWLPLTEEQATQKNLERAERMKEREKRRKEMQEEEDKKREEERKERARGRERDAGNTA
SAGGGSGRPVEGDKDKEREEKGRERERERGREKEGEKRRDSNRGRGSDSKPAGGSRRSRS
HSNPSRDRRR
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggcggaactcgaagatgttacgctagatgggaaacctcttcattcgcttcgtgtggcg
gatttaaaagctgccttggagcaacgagggctggccaaaagtgggcagaagactgcgctc
atcaagcgactaaaaggggcactcatgttggagagcctgcagagaacctccacctctcat
tcgggcctgcagcccaactcacagataggggaggagatgagccagaacagttttattaaa
cagtacttggccaaacagcaagagctcctgcggcagagaatggagcgagaggcacgcgag
gcagccgaggcagacgatacagacagccctgccgggcccgaggaagacgatcacacagct
gccaatgacagcacctcctacccgccagacaagcatcatgttgtagcatctcagccctct
gtgccagaggatggaggaggtgaccagttgggtccacaggatccggttgctctgggaggc
cacaggttggacgcaggcactgcttcagtatcacatgatccccctgatgtccccacagcc
aagatctggcgcccatcattctctcaggaggaggtcgccactccctcccctccacgtgca
gttgcctctctttctgtgcgtgtggtcggccagccagagcgacagggtgtacccctgatt
gtaccccggccacaacagagagaaggaactgcccccgtagaagcaggccctgctcatccg
atgccacatctcagccagtctgcacgcacacaggaggacagtgatgaggacgatgatgat
gacgacgatgacagcgatgaggacgatgactggggtccttcatctcgtgggagaaagaac
gttcacacgcctccagcacagcgatcgagacgcaagcttcagcctcctcaacacattcca
ccccatcattctccattgcagctccgacagcccactcctcctccctctccgcccccagag
ctttccttccctctgcctgacacccccaaacaaagccccccagagcaggatgaacctgaa
gccccagaaggggccgctgtgtcctctccagtttctttgcagaggcaagaatccagctcc
agctccagatccagcagccctgagcccccatccctgcgcaggcctgggccactcagtctg
ctggttcgcaagatggagtctgagggggctttcgatggtgggcaaaagaaagatgaagaa
gaagaaggagatgccaccgcagcgactggagaacaggttgagcccggatctggcgtgctt
gtgttttccaaaggagggaatgatgacgatcacaccagctgtgatcctgaaatgcttcct
gatcatcaagattcactccaagagcagcttcctaaagggcctgagtctctacccattatg
ccctctatcacagaaagcagccctcaggagtcagtggagatgaaagaagccgaggatgaa
caagaagaaagttcgcagccggatgaagaagaggaacaagatgaccaggaggaaagtagt
gaggagaaagagaaggtgactgatgagaattttaatgcctcatcatggcaacgtgaaaga
gagacatcgccctctcaggactcccatgacttccagcgtacctcacatccaccttcccca
cctgctcctgcaagacgagcacgtgttttttctgaagttcccccacctgagtgcctcatt
tctccttccaaaccagagccagtatcaatccttacgtcaggaccagagcatgcagatgtt
gaaatggagactgaagctcccactttacctccacagtcctcacctgaaaaggagcaagaa
gagacactggaggcggaagcagagaagaaggagcctgcagaggcagttgaagcaacagaa
gactctccttcatcacttcctccatctccaccacctgaagaagtaaaagcagagatagaa
actgagaaaccaatggagaaagaaagcgaggtgcctgcagaggaagaaagcgaggtgcct
gcagagggagaaagcgaggtgcccgcaaagggagaaagcgaggtgcccgcggaaagagaa
agcgaggtgcctgcagagggagaaagcgaggtgcccgcaaagggagaaagcgaggtgccc
gcggaaagagaaagcgaggtgcccgcagcagaggaaagccaggtgcccgcagcggaggaa
agccaggtgcccgcagcggaggaaagccaggtgcccatggaaagaaaaagcgaggcagaa
agagagagcgaggtgcccgcagtggagaaaagtgaggtgcccgaggtggagaaaggcgag
gtgcctgcagtggagaaaggcgaggtgcccgcagtggagaaaagcgaagtgcccgcagcg
gaggaaagcgaggtggtcgcagaaagaaaaagcgaggctgaaagagagagcagggtgccc
acagcggaggaaagcgtggtgcccacagcgcaaagagaaagcgaggcagaaaaagaaagc
gaggtgccggcagcggaggaaagcaaggtgcctgcagatagacaaagagagaaatctaca
gatagagaaagtgagataccatcaaaaagagtgaaggagagatctgcggagagaaaacgg
gagagatctgcggagagaagacgggagaaatctgcggagcagagaagggagagatctacg
gagagaaaaagaaagcgatctacggagaggggaagggagagatcttcggagagaaaaagg
gagagatcttcggagagaaaaagggagagatcttcggagagaaaaaggaggagatctgcg
gagagagtaagggagagatctgcagaaaggaaaaggaagagatctccagagaggggcggg
agggagagatctacagagaggggaagagagagatctgcagaaagaaaaaggaaaagatct
gcagaaagggtaagggagcgatccgaagaaagaagaaggaagagatccatggaaagagaa
aaggagagatctgcagaaagagaaaaggagcagtctgccgagagaggaagagggagatct
gcagaaaaagatagacgcagatccacagagagggaaaaagagacatccacagctggagag
agatctacagagagaggaagcgcaaaatcaacagagagggaaaaatcacctgaacgggcc
tccagccagtcttcatcctccgactccgattccgaatcctcttcctccagttcctcaggc
tcctccccacagcgcaaacccagcccccccaggcagaatcaggatgagaagaaagccagc
agcccagatgatgcgtcagaggagaaggaagaacatttgagggatgtaaagcaggccacg
gttgctgagcccacaggtcctgtctccatggagctccaggaacagcccgagtcggagagc
gcactggctcatcctgcctcacaggaggtgcctgagaccagcgagtcccgtcctgatgag
agcaccactccaaaagcatttgctgctcgcaagatttcactcaccactgctaaaccagaa
ggagcggcagtggaggcggagtctggaggcggtgctggtaggaagaggaggtggggctcc
agtacagcagtcactgccaaaaagccatcaatcagtatcaccactgagtcactgaagtct
ctaatcccagaccttaagccactgcaagaggcagtggtggacctgcaccctgatgaaggc
cgtttctctggggacgaggactcggctcagcagcctgagcgtgatgaagaccaggggctt
caaatcagacgtactgtaacacaggtggttccagctgaaagtcaagagaacggacagaaa
gaaaaggaagaggatgaagatgaggaagaagagcaggcagaagtagaaaaggagaaaccc
cccaagaaacagagaagggagagctcctcagaggttgccatggaaacacaggagtgtgac
aataagaaggtgacccttaacgactcggtggtgcggcgttccatcagccagcagaaagtg
gccgtgtccatcaccatcgacgacccggtgcgcacaggccgccagctctctcctcctcgt
ggcaaagcgtccaacattatccacgtctgcaacctggttcgtccctttactttgggccag
ttaaaggagctgttgaatcggaccggcgcggtggtggaagacggcttctggattgataag
atcaaatcccactgctatgtcacttactccagcacagaggaggctgttgcaacacgtgaa
gcccttcacggtgtaaaatggccctctagcaaccccaaagtgctccgagtggacttctgt
gaacagaaagagttggacttccataaagggctgctgactgaagatccacgagccgctgtt
gccccaaaccgccctgctgcacctccgccactcatgcccccggcacgggagaaggagcga
gagaaggaacgggagaaagacggagcggcaccaaacgtgagggaccagtgggccgaaaga
gagcgagagatggagcgcagagaaaggacgcgctcggagagggagtgggacagggacaaa
gtgcgagacttccccagggatgaacgggaagcggcccgaagatcacgatcgcgagaccgg
gacaggagacgcaaggagcgaggaaagagcaaagagaggaagacagagaaaaaagacaaa
ccagaggagcctcctgccaaacttctggatgatcttttccgcaaaaccaaagcagctcca
tgtatttactggctgccactcactgaagaacaggcgactcagaagaacctggagcgggca
gagaggatgaaggagcgggagaagaggaggaaggaaatgcaagaggaagaggacaagaag
cgtgaggaggagaggaaggagagagcacgaggcagagagagagacgcagggaacacggca
agcgctggaggaggctcgggccgccctgttgaaggagataaggacaaagagagggaagag
aaggggagagaaagagagcgggaacgcggtagagaaaaggagggcgagaaacggagagat
agcaacagaggcagaggcagcgactccaagccagcagggggcagcagacgctcacgaagc
cacagcaacccttccagggacagacggcgctga
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