Clarias gariepinus (North African catfish): 128524586
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Entry
128524586 CDS
T10780
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128524586 (sox1a)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128524586 (sox1a)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128524586
NCBI-ProteinID:
XP_053353195
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Position
5:18105018..18106993
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AA seq
345 aa
AA seq
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MYSMMMETDLHSPGPQTNTNLGQTGPNTGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAGAGAGVGLGVGMSAAGVGQRLESPGGHGGSAGAGYSHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYGQHPGSGAHHHHHPHAHHHHPHNPQPMHRYDMSALQYSPISS
SQSYMSASPPGYGGISYSQHQNAGVASSAAIGTLSSLVKSEPNVSPPVSTHSRGPCQGDL
REMISMYLPAGESGEPSVQSRLHALPQHYQNTTAGVNGTVPLTHI
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacttgcactccccgggacctcagaccaatacgaac
ctggggcagacaggtccgaacacggggagcaaagccaaccaagagcgcgtcaaacgccct
atgaatgcttttatggtgtggtcccgcggccagcgccggaaaatggctcaggaaaatcct
aaaatgcacaactctgagatcagtaagagactcggcgcagagtggaaggtgatgtcagaa
gctgaaaagcgacccttcatcgatgaggcaaaaaggctgcgtgccatgcacatgaaagag
catccggattacaaataccgaccgaggcgcaaaaccaagacgctgcttaaaaaggacaag
tactctcttgctggaggtctgctcggcggagcgggcgcgggcgcgggagttgggctcggg
gtgggtatgagcgcagccggagtaggccaaaggttagaaagccctgggggtcacggaggc
tcagccggcgccggttactcgcatatgaacggttgggcaaacggcgcgtattcgggccaa
gtcgctgccgccgccgccgctgctgctatgatgcaggaggcgcagctcgcctacgggcag
cacccgggcagcggggcacaccaccaccaccaccctcatgcccaccaccatcatccgcac
aacccgcagccaatgcaccgctacgacatgagcgctctgcagtacagccccatatccagt
tcacagagttacatgagcgcgtcgccgcccggctatggagggatttcctattcccagcac
caaaacgcaggtgttgcgtcgtcggccgccatcggcacgctgagctcgttggtcaagtcc
gagccgaacgtaagtcctccagttagcacgcactccagaggcccctgccagggagacttg
agggagatgataagcatgtatttaccggctggtgagtccggagagccgtccgttcagagc
agactacacgctttaccgcaacactatcagaacacgacggccggagtaaatgggactgtc
ccgctcacgcacatttga
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integrated database retrieval system
