KEGG   Clarias gariepinus (North African catfish): 128524979
Entry
128524979         CDS       T10780                                 
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
cgar  Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cgar04131]
    128524979 (copa)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cgar04147]
    128524979 (copa)
Membrane trafficking [BR:cgar04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    128524979 (copa)
Exosome [BR:cgar04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   128524979 (copa)
  Exosomal proteins of bladder cancer cells
   128524979 (copa)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Herpes_BDLF2
Other DBs
NCBI-GeneID: 128524979
NCBI-ProteinID: XP_053353454
LinkDB
Position
1:51311575..51435713
AA seq 1231 aa
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRLW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETE
VRGITGVDLFGTSDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK
LALVNRKYDEVLHMVRNSKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDL
EKEMIPEVDQNAELLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGRAGQMAADIDMDAP
GVEGWGEDAELRLEDDGFMDAQEGLGEEGALGKEEGGGWDVEEDLDLPPELDVPAGAGGG
AEGEGFFVPPTKGMSPAQMWCNNSQLPVDHILAGSFETAMRLLHDQVGMVRFEPLKPLFM
QAFSRGRVSYVGLPSLPCLFSHPLRDAGTAEGRRQRDGQKGGVPAVGLHLRDLIARLQQC
YQMTTAGRFDEAIDKFRSILLSVPLLVLDNKQEIAEAQQLITICKEYIVGLTMETERKKL
PKESLEQQKRQCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLKNFKMAAGFARRLLELGP
KPEVAQQTRKILAACEKNLTDTHQLNYDPHNPFDLCAASFTPLYRGRPVEKCPLSGACYC
PTYKGQVCRVTQVTEIGKDVIGLRVSPLQFR
NT seq 3696 nt   +upstreamnt  +downstreamnt
atgttaaccaaattcgagacaaaatcagcgcgcgtgaaaggcctgagttttcacccgaag
cgcccgtggatcctcgccagtctgcacaacggcgtcatccagctgtgggattaccgcatg
tgcaccctcatcgacaagtttgacgagcacgatggtccggtgagagggatcgacttccac
aagcagcagcctctgtttgtctctggaggagacgattacaaaatcaaggtgtggaactat
aagctccgccgctgtctcttcactctgcttggacacctggactacatccgcacaaccttc
ttccaccatgagtacccgtggatcctgagtgcttcagatgatcagaccatccgcctgtgg
aactggcagtcccggacctgtgtctgtgtcctgacaggtcataaccactacgtgatgtgc
gctcagtttcacccgtcggaggacctggtggtgtcggccagcctggatcagaccgtgcgg
gtgtgggatatctccggtttgaggaagaagaacctgtctccgggcgccgtggaaacggaa
gtgcgcggcatcacgggggtggatctgttcgggacgtcggacgccgtggtcaagcacgtg
ctggagggtcatgatcgaggagtgaactgggccgcgttccaccccagcatgcctctgatc
gtgagtggagccgatgaccggcaggtgaagatctggaggatgaacgagtcgaaggcgtgg
gagctggacacctgtaggggacactacaacaacgtgtcctgcgccgtcttccacccgcgc
caggaactcattctgtccaactccgaggacaagagcatccgagtgtgggacatgtccaag
aggaccggcgtccagaccttccgcagggaccacgaccgcttctgggtgctcggggctcac
cctaacctcaacctgttcgctgctggccatgacagtgggatgttggtgtttaagctggag
cgtgagcgtcctgcctacgccgtgtacggaaacatgctgtactacgtcaaggatcgcttc
ctgcgccagctcgacttcaacagcagcaaagacacggccgtcatgcagctgcgcagtggc
tccaagttccccgtcttcagcatgtcatacaatcctgcagagaacgccgtgctgctgtgt
acgagagccacaaatctggagaacagcacgtatgatctgtactccatcccacgagagagc
gactctcagaaccctgacgctccagagggaaagcgctcctcaggactgacggcggtgtgg
gtggcccggaatcgcttcgccgtgttggaccgcatgcactcgctgctgataaagaacctg
aagaacgagatcgtgaagaaggtgcaggtgccgagctgcgaggagatcttctacgcaggg
acgggttctctgctgctgagggacgcggacggagtcacgctgttcgacgtgcagcagaag
cgctcgctcgccaccgtcaaaatcgccaaagtcaaatacgtggtgtggagcgcagacacc
agccacgtcgccctgctggccaaacacgccattatgatctgcaacaggaagttagagagc
ctgtgtaacatccacgagaacatccgcgtgaagagcggcgcatgggacgagagcggcgtg
tttatttacaccacctccaaccatatcaaatacgccctcacctcaggtgatcacggtatt
atccgcaccctggacctgcccatctatgtgacccgagtgagggggaacagtgtgtactgt
ctggatcgggagtgcaggccgcgcgtcctcaacattgaccccaccgagtaccgcttcaag
ctcgcgctcgttaaccgcaaatacgacgaggtgctgcacatggtgcgtaactccaagctg
gtgggacagtccatcatcgcgtacctgcagaagaagggctacccggaggtggcgctgcac
ttcgtcaaggacgagaaaacccgcttcagtctggccctggagtgcgggaacatcgaggtg
gcgctggaggcggcgaaggctctggacgagcggagctgctgggagcgtctgggcgaggcg
gcgctgctgcaggggcaccaccaggtggtggagatgtgctaccagagaaccaagaacttc
gacaagctcaccttcctctacctgatcaccgggaacctggccaagctccgcaagatgatg
aagatcgctgagatcaggaaggacatgagtggacattatcagggagctctgtatctgggg
gacgtcagcgagagagtgcgcatcctcaagaactgtggacagaagtctctggcgtacctg
accgcagcaacacatggcatggacgaagaagcagaagcacttaaggagaccttcgacctg
gagaaggaaatgatccccgaggtggaccagaacgccgagctgctgcagccgcctcctccc
atcaaccccctggacacaaactggcccctgctcaccgtctccaagggcttcttcgaggga
gccatcgccgctaaaggacgagcaggtcagatggcggccgatatagacatggacgctcct
ggagtagaagggtggggtgaggatgctgagctccgcctggaagatgatgggtttatggac
gctcaggagggactgggtgaggaaggagctctggggaaggaggaaggaggaggatgggat
gtggaggaggatctggaccttccacctgaactggacgtaccagccggtgctggaggcggg
gctgaaggagaaggcttctttgtcccgcccactaaaggtatgagccccgcccagatgtgg
tgtaacaactcgcagttgccggtcgatcacatcctcgccggatcgttcgagaccgccatg
aggctgctgcacgatcaggtgggcatggtccgcttcgagccgctgaagcccctcttcatg
caggcgttctcgcgggggcgcgtgtcctacgtggggctcccatctctgccctgcctcttc
tcccaccctctgagggacgcgggcacggccgagggcaggaggcagcgagacgggcagaag
ggcggagtcccggccgtggggctgcacctgcgtgacctcatcgcccgcctgcagcagtgc
taccagatgaccaccgcggggcgcttcgacgaggccatcgacaagttcaggagcatcctg
ctgtccgtcccgctgctcgtcctcgataacaagcaggagatcgccgaggcccagcagttg
atcactatctgtaaggagtacattgtgggtctcaccatggagacggagaggaagaagctt
cccaaagagtctctggagcagcagaagagacagtgtgagatggcggcgtacttcacacac
tgtaacctgcagccggtccacatggtgctggtgttgcgcacggcgctcaatctcttcttc
aagctgaagaactttaagatggccgcagggttcgcgcgccgcctgctcgagctcggaccc
aaacccgaggtggcgcagcagacgcgtaagatcctggcagcgtgcgagaagaacctgacc
gacacccaccagctcaactacgacccccacaaccccttcgacctgtgcgccgcctccttc
accccgctgtaccggggacgacccgtggagaagtgccctctgtccggggcctgctactgc
cccacctacaaggggcaagtgtgcagggtcacacaggtgactgagatcggtaaggacgtg
atcgggctgcgtgtgagtcctctgcagtttcgctga

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