Clarias gariepinus (North African catfish): 128526055
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Entry
128526055 CDS
T10780
Symbol
col28a2b
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cgar01002
]
128526055 (col28a2b)
Peptidases and inhibitors [BR:
cgar01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
128526055 (col28a2b)
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_CoxE
Chp1_domII
Motif
Other DBs
NCBI-GeneID:
128526055
NCBI-ProteinID:
XP_053353590
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Position
6:4518729..4554982
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AA seq
1313 aa
AA seq
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MRLHVSWLVLLLGLRCVCSQQDDYEEDYDEEEEEERTIRGKAKSKPLTSNLTPKNNAQAL
TGDDCSLELAFLLDSSESAKDNHGQEKELVTEVVERLQNMKLQSGSRLSFRSALLQYSSH
VILEQTFSQWKGVANFKANIAPITYIGQGTYVTYAITNLTHLYLNESGTGSVKVAVLLYD
GVSHPKNPDVLSAVTDAKNQGVRFFAIGVTPAAREMSKQAQLRMLASSPPHSYLHNLQDK
DIVTKIINELMKLADEACPLEKRCVCEKGERGPSGPAGKRGRPGDDGSPGTKGQKGEGGQ
PGLPGLNGGEGKSGSRGEKGERGECGMPGVKGDRGPEGPVGVSGNRGLQGLPGPNGDIGP
QGPAGHKGERGFPGPPGPQGETGIGITGPKGEIGLQGRAGPPGPPGLGEPGLPGPQGPQG
LQGEKGPPGEGLPGPKGERGIEGPRGLRGPAGPGIKGDKGDYGPPGLPGETGFPGLSVQG
DKGVEGPRGPPGLRGPPGEGYHGPKGDQGLPGEVGAPGASGVGEPGPKGEPGAPGLSGLP
GLPGEDGAPGQKGEPGLPGSRGQEGAPGVGTQGEKGDQGQRGFRGLSGPPGIPGPSGAKG
EPGAPGRLGLPGPPGRTVTGAKGDAGQPGLPGPLGETGYGFPGPKGERGDAGPPGPFGPK
GAGYPGLPGPPGLPGHPGDPGPEGLGVPGPKGDIGFRGLPGPPGPPGEGLQGLPGTTGRP
GPPGSLGPPGQGIQGPKGELGAQGLVGPRGPPGEGLPGTKGDRGTPGERGQKGVKGDFGD
PGSPGQPGRQGVKGETGLTREDVIRMIREICGCGIKCKERPMELVFVIDSSESVGPENFE
IIKDFVMALVERVTVGNRATRVGLVLYSLEARLEFDLARYAAKRDVKHAVRRMTYMGEGT
YTGTAIRKATREAFRTARSGVSKVAVVITDGQTDERDSVKLEIAVREAHAANIEMFALGI
VNSSDPAQAEFLKELDLIASDPDSEHVFQIDDFNTLPALESKLVSQFCEDENGGIFSPIN
GNIYNNHLNRINGLLYESDNNGNRISSGGHYNGNNVDPVNARTHSGTHSGKPSGTYTHTA
IHSGTHSGTHTGTHSGIHTGTHTGTITDTHSGTHTGPHNGTHTGTHSGTVTGTHSGTHTG
PHSETHTGTHSETHTGTHSGTHTISVSHGGGRGDSIPVPVTPQVPHTIDIHTHGSSEHSN
TGDVSSHNRPSTRGRPSSSSSSSSSSTVVTSSTSVHYISAPRPPLPKEIVPLDPRCELML
DQGTCRDYSIRWYYDRTANACAQFWYGGCHGNRNRFDTEDECKKTCVVPRRGG
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgcatgtgagctggttggtgttgttgctcgggctgcggtgtgtttgctctcag
caggacgattatgaggaagactatgatgaagaagaagaggaagagaggaccataagggga
aaagccaaaagcaagccgctcacatccaacctcacgccaaagaacaacgctcaggcgctc
acaggtgacgactgcagcctcgagctggcatttttgctggacagctctgaaagtgccaag
gacaaccacggccaggagaaggagttagtcactgaagtggttgagcgcctgcagaacatg
aagctccagagtggaagcaggctgagtttcagatctgcacttcttcagtacagcagtcac
gtgatactcgagcagacattcagtcagtggaaaggcgtggccaactttaaagccaacatt
gcacccatcacctacatcgggcaaggcacgtatgtgacgtatgccatcaccaacctaaca
catctctacctaaacgaatcaggaaccggaagtgtcaaagtggctgtgctgctctatgat
ggagtatctcatccgaaaaatccagacgtattgtctgctgtgaccgatgccaagaaccaa
ggggttcgattttttgccattggtgtcacacccgctgccagagagatgtctaaacaggca
cagctgaggatgctggccagttctccaccacacagctacttacacaacctgcaggataaa
gacatcgtcacgaagatcattaacgagttgatgaagttggcagatgaggcgtgtcctttg
gagaaaaggtgtgtatgtgagaaaggagagagaggaccaagtggaccagccgggaaaagg
ggtcgaccaggagatgatggaagtccaggaacaaaagggcagaagggtgaaggcgggcaa
ccaggactgccagggctaaacggcggagagggcaaatcaggaagtagaggagagaaggga
gagagaggagaatgtgggatgcctggtgtcaaaggagacagaggtcctgaaggtccagtg
ggcgtcagtggaaacagaggactgcagggcttgcctggacctaacggtgacattggaccc
cagggaccagcaggacacaaaggagagaggggctttcctgggccacctggacctcagggt
gaaactggaataggcattactggaccaaagggtgagattggacttcagggcagagctgga
cctccgggacctccaggacttggagaacctggcttaccagggcctcaggggccacagggg
ctgcagggagaaaaaggacctccaggagagggattacctgggccaaagggggagcgaggg
atagagggtccgaggggactgagaggaccagccggacctggaattaaaggagacaagggc
gactatggaccccctgggttacctggagagaccgggtttcctggattaagtgtgcaagga
gacaagggtgttgagggaccacgtggacccccagggctcagagggccaccaggagaaggt
tatcatggaccaaagggtgatcaaggattaccaggagaagtcggagcaccaggggcgagt
ggagtgggagaaccagggccaaagggtgaaccaggggctccggggttatcagggttaccg
gggttacctggagaggatggcgcacctggacaaaagggagagcctggtcttccaggttcg
agagggcaggaaggagcaccaggtgttggaacacagggagaaaagggagatcaaggccag
agaggattccgtggattatcaggacctccgggaatccctgggccatcaggagcaaaaggt
gaaccgggagcaccggggcgcctcggtttaccaggacctccaggacgtacagtaactgga
gcaaagggtgatgcaggtcagccaggtcttccaggaccattgggggagacagggtatgga
tttcctggaccaaagggagaacgtggagatgcaggtcctcctggtccatttgggccaaaa
ggagctggctaccctggtctaccggggccacctgggcttcccgggcatcctggagatccc
ggtccggagggtttgggagtcccagggccaaagggtgatattgggtttcgaggtttgcca
gggccaccaggaccaccaggcgagggcctgcaaggtttaccaggcaccacaggaaggccg
ggacctcctggttcactaggacccccagggcagggcatacaaggcccgaagggtgagctt
ggagctcagggcttggttgggccaagaggaccaccaggagagggtcttcctgggacaaag
ggtgaccgtggtactccaggagagagaggccagaaaggggtcaaaggtgacttcggggat
cctggatcaccaggtcaaccaggtcgacagggagtgaaaggagagacaggtctgacgaga
gaagacgtcatcagaatgatacgagaaatatgtggatgcgggattaaatgtaaggagcga
ccgatggagctggtcttcgtgattgacagctcggagagtgtcggccctgagaactttgag
atcataaaggattttgtaatggcactggtggagagagtgacggtaggaaaccgtgccacc
cgagtcgggctcgtgctctacagcttggaggctcggctggagttcgacctcgccagatat
gccgcgaagcgtgacgtcaaacatgccgtgcgcaggatgacttacatgggcgagggcact
tataccgggacagccatccgcaaagcgacacgtgaggccttccgcaccgctcggtccggg
gtctccaaggtcgctgtggtcattacggatggacagacggatgagcgtgactctgtgaag
ctggaaatcgcagtgcgggaggcacacgctgccaacattgagatgtttgctctggggatc
gtgaattccagtgatccagcgcaggcagagtttcttaaagagctcgatctcatcgcctcg
gaccctgacagtgagcacgtctttcagatagatgactttaataccctaccagctctggaa
tccaaactggtcagtcagttctgtgaggacgagaacggaggcatctttagccccattaat
ggcaacatatacaacaaccatctcaaccgcatcaatggtctcttgtatgagtccgataac
aacggaaatcgcatcagcagtggtggacattataacggaaacaatgtagacccagtaaac
gccaggacacactctggaacacattcaggaaaaccctctggtacttatacacatactgcg
atacacagcggtactcacagtggaacccacactggtactcacagcgggatccacactggt
actcacactggaacaattactgatactcacagtggtacacacactggtcctcacaacggg
acacacactggtactcacagtggaacagtcactggtactcacagcggtacacacactggt
cctcacagtgaaacacacaccggtactcacagtgaaacacacaccggtactcacagcggg
acacacactatctcagtcagtcatggaggtggaagaggtgacagtattccagtacctgta
accccacaggtcccacacaccatagatattcacacacatgggagctctgagcacagcaac
acgggagacgtttcatcacacaacagaccatctacacgtggcagaccatcatcatcatca
tcatcgtcatcatcatcgactgtagtcacatcatccacttctgtgcattacatttctgcc
ccgcgacctcctttacctaaagaaattgtgccccttgacccccgctgtgagctgatgttg
gatcaggggacgtgtcgcgattacagcatccgctggtactacgaccgcaccgccaacgcg
tgtgcgcagttctggtatgggggttgtcacggcaaccgcaatcgcttcgatactgaggac
gagtgcaagaagacctgtgtggtcccacgaagaggaggatga
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