Clarias gariepinus (North African catfish): 128526317
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Entry
128526317 CDS
T10780
Symbol
pbrm1l
Name
(RefSeq) polybromo 1, like isoform X1
KO
K11757
protein polybromo-1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128526317 (pbrm1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128526317 (pbrm1l)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128526317 (pbrm1l)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128526317 (pbrm1l)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
128526317 (pbrm1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128526317
NCBI-ProteinID:
XP_053354033
LinkDB
All DBs
Position
6:complement(21337124..21359517)
Genome browser
AA seq
1636 aa
AA seq
DB search
MGSKRRRIASPSSSVSGDFDDATSSTPASSWKRRKTSSATAVDQIAVCNELYNTIRDYKD
EQGRQICELFVRAPKRRNQPDYYEVVSQPIDMMKIQQKLRTEDYQDAEQFSEDFKLLINN
AKAYYSAESSEYRAACKLWDLFLTTKSTLLRGGDVEDDEEEEESEDADNPGVSTEEEMSP
NYMKGILEQLLETLLSYTDSSGRLVSELFQKLPSKLQYPDYYAIIKEPIDLRTIAQRIQM
GHYKSINAMAKDIILLTKNAKAYNEPGSQVYKDANTIKKVFIQRRTELEQAEPTKSSLRI
RNRRSAQGDRLPAITMSLQPGSESDEDSILSGSVRYDAGEMESESGHTRLATADPIFQLY
QAVRGARNTQGQLIAEPFLQLPSRREYPDYYQQIKNPISIQQIREKMRNGEYEGIEQMES
DLNSMFENAKRYNVPNSAIYKRAQKLQQIMQLKRREFRDDDEGDSLLSPMTPDIGSSKRK
SHKKNTKKNRMKALYAAVTEAREAGTGRRLCDLFMVKPSKKDYPDYYQVILEPMDLRTIE
GNIRAERYVSEEGLINDMKLMFRNARHYNEEGSQVYNDANILEKMVIEKQKELGPLPEDD
DVGSPKLKLRRSGGAASPKKSRSQTSLQQKLGKLYEAVSGFTDSRGRRLSTVFLRLPSRS
ELPDYYAAIKRPIDMERLRSYMLQGRYQDIESMAEDFILMFNNACTYNEPESLIYRDALL
LHRAFLDARRTLEKEEEEGEEKVGSQLAVAPLVCELIRNLFVSVMGHQDDEGRCYSDSLA
EVPAVDPANTEDPPLSLEIIRNNVECTRYRRLDVFQEHFFEVLEKARRLNRTDSEIFEDS
IELQQFFVKIRDELCKNGEILLSPALSYTSRHLHADVEQEKREKLPQEVEEDRLKAEEEK
KEEEKTEGVTKEQWSSGLQNTYTQDCSFENSTYSVGDFVYVEPSEANLQPHIVSIEKLWK
DEAGEQWMFGSWFYRPGETFHVATRKFLEKEVFKSDYYNKVPVSKILGKCMVIFVKDYFK
LQPEGFKPEDVFVCESRYATRTKAFKKIKLWSVPPSSVKLIPRDVPLPVVRVASMFVKAA
NRDQDKMADAANDHGSFIEKEREAVPVEVANGEPGCQYYEQLCYNNMWLKVGDCVYIRSH
GLIRSRIGRIEKMWEQDGVAFFFGPIFIHPEETEHEPTKMFYQREVFLSNQEETSPMMCI
LGKCVVSSFKDFISCRPTEFAEENVHVCESRYIESEKQMKKFKGLKRFSLSAKVVDDEIY
YFRKPLVPSKEPSPLLDKKIEELEAKFADVEDLDEDLDELEDEDDDAPATPSMPQHQSSL
MSDMDLPNLPLQSTPKTMKGLSKKEGAKRKINMSGYILFSSEMRAVIKARHPDFSFGELS
RLVGTEWRNLESTKKSEYEERAAKLVEQQERERALQQQHQQQQQQQAAASPRAGMMGNYG
PPFMPMQGPPDGMMGMGGTPPHTMGVPALPPQHYFTSSMAGYPGMLHPGGIGPGINSMAG
SPSPANPYGLQMGAYGPGQVAPPPYPGQSQQGQSSHQPQGAPMFVAPPPRPQRLLHSEAY
LKYIEGLNADCPTISKWDQSLKAQRKDSRLSREQESRLPSHWLKSKGAHTTMVDALWRLR
DLMMRDTLSIRQAYNL
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgggctccaagagacgccgcattgcttctccctccagcagtgtgagtggagactttgat
gatgccacttcatcaactccagccagcagctggaaaaggaggaagacttctagtgccaca
gctgttgatcaaattgctgtttgcaatgaattgtacaacactatcagggactacaaagat
gagcaagggaggcagatatgcgagctctttgttcgtgcaccgaaaagaaggaatcagccg
gattactatgaggtagtgagccagcctattgacatgatgaagatccagcaaaagctcagg
acagaagactaccaagatgcagagcagttctctgaagatttcaagttacttataaacaat
gccaaagcttactattcggctgaaagttcggagtacagagctgcctgtaagttatgggat
ctgtttctaaccacgaagagtaccctgcttcggggaggagatgtcgaggatgatgaggaa
gaagaggaaagtgaagatgcagacaacccaggagtctctacagaggaggagatgtcaccc
aactatatgaaggggatcttagagcagctgttggagactcttctatcttatactgattct
tcagggagattagttagtgaacttttccagaaactgccatctaaactgcaatacccagac
tactatgccataattaaggagccaatagatttgcgaaccatagctcagaggatacagatg
ggacattacaaatccatcaatgccatggccaaggacattattcttttgaccaaaaatgcc
aaagcctacaatgaacctggatcacaagtatataaggatgcaaacacaatcaagaaggtc
tttatccaaaggaggactgaacttgaacaggcagaaccaacaaaatccagcctccgcatc
aggaatcggaggtctgctcagggtgatcgtctgcctgctataaccatgtctctgcagcct
ggctcagagagtgatgaagactccattctctcaggctctgtgcgctatgatgctggggag
atggagtctgaaagtgggcacacccgactagctactgctgacccaatcttccagttatac
caagctgttcgaggggcccgtaatactcagggtcagctcatcgctgagccgtttctccag
ctaccttcacgcagagagtaccctgattactaccagcagatcaaaaacccaatttctatc
cagcaaatcagagaaaaaatgcggaatggggagtatgagggaattgagcagatggaatcg
gaccttaattctatgtttgagaatgctaaacgctacaatgtccccaattctgccatttac
aaacgtgctcaaaaattgcagcaaataatgcagctaaaaagaagagaatttcgagatgat
gatgagggagacagtttgctttcccctatgacccctgacattggaagcagtaaaagaaaa
agtcataagaagaacaccaagaaaaacaggatgaaagcattgtatgcagcagtgaccgag
gcacgggaagcaggtacaggtcgacgcctctgtgatctctttatggtgaagccttcaaag
aaggactaccctgactactaccaggttatcttagagcccatggacctgcgcaccattgag
ggcaatatccgtgctgaacgctatgtcagtgaggagggtctcataaatgacatgaagctc
atgttccgcaatgcccgccactataatgaggaagggtctcaggtttacaatgatgcaaac
attctagaaaagatggtgatagaaaaacaaaaggaacttggacctttaccagaggatgac
gatgttggctcacctaagctcaaactacggaggagtgggggtgctgcatctcccaagaaa
tcccgttctcagacgtccctgcagcagaaactgggcaagctctatgaagctgtttctggt
ttcacagacagtcgcggacgtcgcctaagcacagtgtttctgcgtctgccatcacgttct
gagctgcctgattactatgcagccatcaagcggcctattgacatggaacgtctgcgtagc
tacatgcttcagggccgctaccaggacatagagtcgatggcagaagacttcattcttatg
ttcaacaatgcctgtacatacaatgagcccgagtcgctcatctaccgcgatgcactgctg
ctccacagagcttttcttgatgcacgccgcacccttgagaaggaggaggaggagggagag
gaaaaggtgggatctcaattggcagtagctccactggtttgcgaacttattaggaacctg
tttgtgtcagtgatgggccatcaggatgacgagggccggtgctatagtgattcgcttgca
gaggtgcccgctgtggatcctgccaacacggaggacccaccccttagcttggagataatt
cgtaacaacgtagagtgtacgcgctatcggagattggatgtgtttcaagagcatttcttt
gaggttctggagaaagccagacgccttaatagaactgactctgagatctttgaggactcg
attgagctgcagcagttctttgtgaagattcgagatgaactatgcaagaacggtgagatt
ctcctttccccagcactcagctacacatctagacatctgcatgcagatgtggagcaagaa
aagagagagaagctgcctcaggaagtggaggaagatagactcaaagcagaggaagaaaag
aaagaggaggaaaagacagagggtgttacaaaggaacagtggtcatcaggccttcagaac
acctatactcaagactgcagctttgagaacagcacctacagtgtaggagactttgtgtat
gtggagccatctgaagccaacctccagccccacatagtaagcatcgagaaactatggaag
gatgaggctggtgaacagtggatgtttggctcctggttttacagaccaggtgagaccttc
cacgtggctacacgaaagttcctggaaaaggaagtatttaagagtgactactataacaag
gttccagtcagtaagatactgggaaaatgcatggtcatatttgtaaaggactattttaaa
cttcagcctgagggcttcaagcccgaggatgtcttcgtctgcgagtctcgttatgcaaca
cggaccaaggcctttaaaaagattaaattgtggagcgtgccaccaagctctgtgaagtta
atccctcgtgatgtgccattacctgtagttagagttgcgtccatgtttgtcaaggctgca
aatcgtgaccaggacaagatggcagacgccgcgaatgatcatggtagctttattgaaaaa
gagagagaggctgttccagtagaggtggccaatggtgaacctggatgtcagtactatgaa
cagctatgctataataacatgtggctgaaagtgggtgattgtgtctacattcgttctcat
gggttgatacggtcaagaattggcaggatcgagaagatgtgggagcaggatggagtagct
ttcttctttgggcccatattcatccatcctgaggagactgaacatgagcccacaaagatg
ttctaccagcgtgaagtgttcctgagcaaccaggaggagacctcccctatgatgtgtatt
ttaggaaagtgtgtagtctcctcctttaaggacttcatttcctgtaggcccactgagttt
gcagaggaaaatgtacacgtgtgtgagagccgctatattgagagtgagaagcagatgaaa
aaatttaaaggtctcaaacgattctccctttcagccaaagtggtggatgatgagatttac
tacttcagaaagccgcttgtgccttccaaggaaccatctcccttgctggataaaaagatt
gaagagctagaggccaaatttgcagatgttgaggacctggatgaagatctagatgagcta
gaggacgaggatgatgatgcaccagcaacaccctccatgccccagcatcagagttcactg
atgagcgatatggaccttccaaacttgcctttacagtccacaccaaagacgatgaaaggt
ctttccaaaaaagaaggcgctaagcgcaagatcaacatgagtggatacattctgtttagc
agtgagatgcgagctgtcatcaaggcccgacaccctgatttctcctttggagagctgagt
cgtcttgtaggaacggagtggaggaacctggaatctactaagaagtcagagtatgaagag
cgggcagctaaactggtagaacaacaggaacgagaaagggcccttcaacagcagcatcag
cagcagcaacagcagcaggcagcagcttctccaagagcaggcatgatgggaaattatggc
ccacccttcatgcctatgcagggtcctcctgatggcatgatgggtatgggtggcacacct
cctcacaccatgggggtgcccgcattgccacctcagcactactttacatccagcatggct
gggtaccctggtatgctccatcctggtggaataggacctggaattaatagtatggctgga
agtcctagtccagccaacccttacggtcttcagatgggtgcatatggccctgggcaggtg
gctcctcctccatacccaggtcagagtcaacagggccagtcttcccaccaaccgcaaggg
gcgcccatgtttgtagcaccgcctcccaggccacagcgtctcctgcattcagaagcctac
ttgaaatacatagaaggactcaatgcagattgccccactatcagcaaatgggaccagagc
cttaaggctcaaagaaaagattctcgcctcagtagggagcaggaaagccggcttccttct
cattggctgaagagcaaaggtgctcacaccacaatggttgatgcgttgtggcgactgaga
gatttaatgatgagagacactctcagcatccgacaagcttacaacctttaa
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integrated database retrieval system
