Clarias gariepinus (North African catfish): 128526373
Help
Entry
128526373 CDS
T10780
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128526373 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
DUF4992
Motif
Other DBs
NCBI-GeneID:
128526373
NCBI-ProteinID:
XP_053354145
LinkDB
All DBs
Position
6:4282746..4377097
Genome browser
AA seq
2960 aa
AA seq
DB search
MWHRALVAAVLLSLPNRSTAQGTCNNVAAADIVFLVDGSSSIGRANFGLVRSFMAGLIRP
YTQAVGASGIRVGAVQYSDTARVEFTFTAYLSGTELLSAIESLNYKGGNTRTGAGLKYIA
DNFFNPRTTRDVPKLAILITDGKSQDNVQDPAEKLRSLGVKIFAVGIKSADQRELELISS
SPQSEFTSFIDKFKDLSSLLPTLSPRVCSASGGSYSSDAAFSGPADLKFIDETTSSIRFR
WTAAGGPVTGYLVQYMPLSGLGQPVRAEMREETVPASQQAYLARDLLSGTDYLVSVIAQY
PNSVGESVSAKARTRSVQGVATLRLVQAGFFTLALAWDRPSGSIQGYRITYGPRGDPASL
LRELTLGPEATSVTLDGLETDTEYDVSLYTLFPRNNVAPTTLTASTLRLQGVQQLSVATT
SNSSVAVRWQGVTGARGYRLVWGPFVGSDIETVEVSGDSQTHTLVNLRPDTEYIVTVIAL
YNGETEGPAANARFKIERAEQQVLRAVTTGSSSILLTWNFITAARGYRLEWRREGVGTRV
NKQTFPQSTTRYEITGLQPSTDYIITLYTLYEGREEPTSALPLVGRVSNLRVAETIGRTV
RLAWNGIAGATKYNIVVLNKQSGLEIKRTAYGNQTTFDLRDLLGGVAYSVSVSAVVGYNE
GPAATLIITPDFAPLPSKVTNLRVVNVNSRRIRITWNVVNGATGYRVTWRQGDNPEQFQE
LGSGITSYVIERLQPDESVIVGVASMIGSQVGEVVTLSTRTNGYIGTVSGLRINDSGATR
IRISWDPVSRATGYKITWQRNDGPEDSQVVSAGVTSYTVSELQQGSSYRISVSALVGSRE
GPVASLTASTVQEEVVVGPVTNLHHESRGEVVRISWIGVQGATAYRVIWRRSDGGQESSQ
LVGGNTTSLDLRQLEGGAQYDVQVIALVQNREGPPVSVKVTTGPVPEERPQGVRVEQLAS
GSLRIVWRAVREAEGYRIYWSSSQGETESSRLINRDATSYTLEGLRPGLSYTIRLAAMLR
GREGQPVTIIQSTAAQQSVTDFRAVDVTQDSVQLAWNPLRGATGYILRWQDERDPGGVQS
LTLPDTTSSFRVTNLRLGRRYRFTVQPVFYDYPGPEADVEERTVCVNGRLDVVFLVPATR
DRTALEEPVLSLLSSVAGSLTSIGPQDSQMAVVVYGAEPKVQFLLSRHSNSETLQRDIQS
IPFTERPGTNIGQALTFTQQYFLSQRAGRRPRVPGVVVIIADRKSEDDIRRAAADLRDSG
VVVLAVGVGRVNSEELLLAVTNRSPQNLLQARDADDLYRLHPELADLLCGFARGAVDPGT
TEGCTVQCPQGQKGELGQKGERGSDGVPGRKGEPGRDGTPGREGPRGPEGPTGPPGPSLR
GEKGESGFPGLQGNPGIPGRSGTPGVAGPPGAQGLPGVRGDPGEPGSAGLSGPKGQKGDR
GEPGSVIGVTPGRKGEPGLPGLHGTPGRPGVDGAKGEGGVPGLSGSDGRPGPPGPPGISI
KGEKGSRGEPGSPGGGNGVAVRGEKGEPGRLGPVGPQGSTGLTGQKGAKGDPGEGIKGSP
GVPGLQGEPGDRGPRGPPGEIGSKGDRGQAGEPGPQGDRGERGPPGLAGDKGDMGRPGLQ
GAQGLRGLPGINGLPGEKGAEGAKGEPGGGSGSFGRKGDKGQEGARGSDGLPGEKGEAGQ
KGEKGSPGIGLPGLLGPKGEQGDRGLAGLAGRPGAKGNQGDPGERGEAGNPGPSGPAGPK
GKDGLKGDRGEDGIPGEAGLSGKPGERGLRGAPGQPGQPGEKGDMGDPGEHGRNGSPGPL
GPRGQKGDQGIQGPPGPPGDAAEGQVHLKGDKGDKGEAGDPGEHGSKGQHGEAGTPGAPG
LRGPEGQRGLVGARGDPGERGSPGEKGERGAAGLDGRSGQDGKPGPPGPPGLRGDPGKTG
EPGRDGLAGLRGPQGPPGAVGPPGAAGTPGKPGDDGKPGSPGKSGEDGVPGEDGRKGEKG
ESGPPGRNGQDGLKGDRGSVGPSGPVGPPGSPGVPGNIGPPGQVIYVKGADLSAIPGPRG
PPGAPGETGIQGNTGPRGERGLPGMKGDQGDPGEDGSPGKPGASVDVKRALSDFGIEVRD
LQLVLEKKDVLLREIVERTDKGPKGDKGDSGAPGPAGADGTRGFPGERGQKGDQGEKGSP
GPQGPTGRAIGERGPEGPPGQAGEPGKPGIPGVPGRAGELGEIGKPGEKGERGEKGDRGE
AGKPGVNGVAGPAGPKGDSIVQSVPGPRGLPGPQGVKGEDGAQGPPGSKGERGVAGFRGE
KGDRGEVGEKGRDGLPGLAGEPGKPGQDGKPGLPGFPGVLGRPGNPGETGIRGPPGPMGP
NGPPGPMGVKGDQGEAGIGVQGPPGPQGIRGLSGLTGTPGAIGPQGPPGLPGQTGEGGKP
GVPGRDGIPGKEGTPGLPGKQGIAGPAGPPGTKGEQGDSGPPGKSVAGPPGVKGEPGPSG
ETLPGVAGERGLPGLQGIKGDRGPAGIKGERGASGDPGEAGENGQRGPPGPKGAKGEAGV
GMVGPPGQPGPAGLKGDTGLPGPPGPPGPQGTSGTPGLAGQRGEAGQPGNPGPPGDRGLQ
GFIGKAGNPGTPGNAGPPGPPGTAGTPGVKGDKGEVAVGVPGQRGERGDPGPRGEEGRPG
ADGERGPPGFPGGKGGRGEKGESGPQGEKGEKGETLLVGGPPGEKGNKGETGDRGAKGLQ
GEKGVKGQEGPPGVQGLRGEAGERGAAGFQGARGPGGQKGEPGLPGVPGEAGTPGKDGFP
GMRGEKGEIGIIGMRGPKGDRGAKGACGPEGQKGERGDAGMNGRSGLPGRKGESGDVGSP
GATGVPGKEGLVGPKGDRGFDGLMGPKGEQGEKGERGPPGIPGPPGPRGVDGPAGLTGPQ
GPAGVKGPEGLQGQKGERGPSGPALAGPRGIPGIPGERGVQGEIGLDGAKGERGEPGMTE
EEIRTYVRSEMSQHCACGGK
NT seq
8883 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaccgggcgttggtggctgcggtcttgctgtctctcccgaacagatctacagct
caaggcacgtgtaataatgtcgccgctgcggatatcgtcttcctggtggacggatcgtcc
agtatcgggcgtgccaactttggtcttgtaaggagtttcatggcagggctgatcagaccc
tacacgcaagcagtgggagcatctggcatccgggtcggagcggtgcagtacagcgacacg
gcgagggtggagttcaccttcacggcgtatttaagtggtacggagctgctgagtgccatc
gagagcctcaactataaaggagggaacactcgcactggagccggccttaagtacatcgca
gataacttcttcaaccccagaacaaccagggatgtgcccaagcttgctattcttatcaca
gatgggaaatctcaggacaacgttcaggatcctgctgagaaactgcgcagtttaggagtc
aagatatttgccgtgggtataaagagtgcggatcagagggaactggagctcatttcatcg
tctcctcagagtgaattcacttccttcattgacaagtttaaggatctgagctctttactg
cccacactgtctcctcgtgtctgctcggcgtccggcggatcgtattcgagcgatgctgcc
ttcagcggcccggctgacttgaagtttatagatgagaccacgagttcgattcggttcagg
tggacggctgcaggagggcccgtaaccggctatctggtccagtacatgccgttgtctggt
ctggggcagccagtaagagcagagatgcgcgaggagacggtgccagccagtcagcaggcc
tacttggcacgtgatctgctctcgggcacagactatttggtgtcggttatcgcccagtac
cccaacagcgtgggcgagtccgtgtctgccaaggctcgaacgaggtctgtgcagggtgtg
gccacgctgcggttggtacaggcaggattctttactttagctctggcatgggatcgtcca
tctggctctatacagggctacaggattacatatggacccagaggcgatcctgcgtccttg
ctgcgggagctgacactcgggccggaggccacttctgtcaccctggacggtctagagacg
gacactgaatacgatgtcagcctgtatactctcttccctcgtaacaacgtcgcacccact
acgctcacagccagcacactgcgtctacaaggagtgcagcagctctctgtggccacaacc
tcaaacagcagtgttgcagtgcgttggcagggggtgactggcgccagggggtaccggctg
gtctggggcccgtttgtaggaagtgatatagagactgtggaagtgagcggtgacagtcag
actcacaccctggtgaacctgcgaccggacaccgagtacatcgtcacagtcatcgccctg
tataacggagaaactgaagggccggcagcaaacgcacgctttaagatagagcgagcggag
cagcaggtcttgcgagctgttacaacaggatcctccagcattctgctgacctggaacttc
atcaccgcagccaggggctatcgtctggagtggaggagagagggagtgggcaccagagtt
aataaacagaccttcccacagagtaccacaagatatgagataactggtcttcagccgagt
actgattacatcataacgctgtacacgctgtacgaaggacgggaggagcccacatcagcg
ttgcctttggtcggtagagtttccaacctgcgagtggcggagacgataggacgcacggta
cggctggcctggaacgggatcgccggggcaacgaagtacaacatcgttgtcctcaacaaa
cagtctggcttggagattaaacgtactgcttatgggaatcagacgacatttgacctccgt
gaccttctaggaggcgtggcttactctgtgagtgtgtctgccgtggtgggctacaacgag
ggacctgcagcaaccctcatcatcacaccagacttcgcaccacttccgagcaaggtgacg
aacctgcgtgtagtgaacgtcaacagtcgacggatcaggatcacatggaatgtggttaat
ggggctacgggatacagagtcacctggagacaaggcgacaatccagagcagttccaggag
ctcggttcaggcataacttcctacgttatagagcgactgcagcctgatgaatctgtcatc
gtgggcgtggcctctatgattggcagtcaggttggagaagtggtgactctctccaccagg
acaaacggttacattgggacggtctcaggcctacgaattaatgacagtggtgccacaagg
attcgtatctcttgggatcccgtatccagagcaacgggttacaaaatcacctggcagcgt
aatgatggaccggaagactctcaggtcgtgtctgccggcgtcacgtcctacacggtcagt
gagttacagcaaggctcctcctacaggatatctgtctctgctctggttggctctcgtgag
ggacccgttgcctccctgaccgcaagcacagttcaagaggaggtcgtggtcggaccggtg
actaatttacaccacgagtcccgaggggaggtggtgaggatcagctggattggagtccag
ggggcaacagcgtacagggtgatatggaggagatctgatggtggacaggagtcgtctcag
ctggttggcggcaatacaacatcgctggatctgaggcaactggaaggaggagctcagtac
gacgttcaggtcattgctctggtccagaaccgagaaggacctccggtctctgtcaaggtt
accacaggacccgtgcctgaggaacgcccacagggagtgcgtgttgaacagttagcttca
ggatcactgcgtatcgtctggagagcagtgagagaagccgaaggatacagaatctactgg
agctcctcacaaggggaaactgaatcgagtcgactgatcaatcgggacgcgacctcatac
acattggaaggactccgtcctggcctgagttacaccatccgactggctgctatgctgcgt
ggcagagaaggtcaacctgtcaccatcatacagtccactgctgcacagcagtctgtgaca
gactttagggcggtcgatgttacccaggattctgtacagttggcgtggaacccgttacga
ggtgccaccggatacatactgcgctggcaggatgaaagagaccccggcggcgtccagtcc
ctcactctgcctgatacgacgagctcgttccgtgtgacgaatctgagactggggcgtcgg
taccggttcaccgtgcagcccgtcttctatgattaccccgggcccgaggctgatgtggag
gagcgcacagtgtgtgtgaacgggcgattagatgtggtgttcctggtcccagccactcgg
gatcgcacggcgctggaggaacctgttttaagcctgctttctagcgtcgctggatctctc
acctccatcggacctcaggactcacagatggcggtagtggtctacggcgcagaacccaaa
gtgcagttcctcctcagtaggcatagcaacagtgaaacccttcagagggacattcaatcc
atcccatttactgagagaccaggaactaatataggtcaggccttgacgttcacacagcag
tattttttgagccagagagccggtcgaaggcctcgcgtaccgggcgtggtcgtcatcatc
gctgataggaaatctgaagatgatattcggcgtgctgcggctgacctcagagattctggt
gtggtggtgctggctgtcggagtcgggcgcgtaaactcggaggagctgctgttggcggtt
acaaaccgcagccctcagaatctcctgcaggctcgggacgcagatgatctctacagactc
caccctgaactcgcagacctgctttgtgggttcgccagaggagctgttgatcctggaaca
acagaagggtgtacagttcagtgcccacagggtcagaaaggagaacttgggcagaagggt
gagagaggaagtgacggtgttcctgggaggaaaggagaacctggtcgtgatggcacacct
gggcgtgagggccccaggggacccgagggacccactggtcctccaggaccgtcattaaga
ggagaaaagggagaaagtggttttccaggactgcaggggaatccaggcattcccggtcgc
tcaggaacccctggggtagcaggacctcctggtgcgcaggggttacctggtgtgagagga
gaccctggagaacctggaagtgctggtttatctggaccaaagggacagaaaggtgatcgg
ggggaacctggatctgtcatcggagtcacgccaggacgcaaaggcgagccgggtctgccc
gggctacacggtacaccaggaagaccaggtgtagacggggcaaagggcgagggaggggtc
ccgggactctcgggtagcgatggccgtcctggacctcctggaccacctgggatctcgata
aagggtgagaaaggaagtcgtggggaaccaggcagtcccggagggggcaacggggtagcg
gttagaggagagaaaggtgaaccgggacgtctaggacctgtgggacctcagggctcgacc
gggttaacaggacagaagggagccaaaggagatcctggagagggtataaagggcagtcca
ggagtcccagggttgcaaggagagccgggtgatcggggtccgagaggtcctcctggtgaa
atcggaagcaagggagatcgcgggcaggccggagagcccgggccacagggtgaccggggt
gagagaggaccacctggcctagcaggggataaaggtgatatgggtagaccaggactccaa
ggagcccaaggactcaggggtttgccaggtatcaatggacttccaggggagaagggagct
gaaggagccaaaggcgaaccgggtggtggctcaggttcatttggaaggaaaggagacaag
ggtcaggaaggagctcgaggttctgatggtcttccaggtgaaaagggtgaggcaggacag
aaaggagaaaagggttcacctggaataggacttcctggtctgcttggacctaaaggggag
caaggtgatcggggtcttgctggactcgctggaagacctggcgcgaagggaaaccagggt
gacccaggagaaagaggagaggcgggaaacccggggccttcaggtccggctggacccaaa
gggaaagatggtctaaaaggtgacagaggagaagatggcattccgggggaggctggcttg
tctggtaagcctggagaacggggactgaggggtgctcctggacagcctggtcaaccagga
gaaaagggagacatgggtgatcctggagagcatggacggaatggttctccagggcctctg
ggaccacggggacaaaagggagatcagggaatccaaggtcccccagggccccccggagat
gcggcagaagggcaggttcatctgaagggcgataaaggagacaagggtgaagccggtgac
cctggggaacatgggagtaaaggtcaacacggagaagcaggaacaccgggcgctccaggg
ttacggggacctgagggtcaacgtggactagtaggagccagaggagatccaggagagaga
ggaagtccaggagagaagggagaaagaggagctgctggactggatggacgttccggtcag
gatggaaaacccgggccacctggaccccctggcttacggggtgatcctgggaaaacaggg
gagcctggcagagatggcttagcaggactccgaggacctcagggtcccccaggcgctgta
gggcccccaggagctgctggcacacctggcaaaccaggagatgatggaaaacctggatct
ccaggaaaatctggtgaggacggcgtccctggtgaggatggcagaaagggtgaaaaagga
gaatcaggaccgccgggaagaaatggacaagatggactgaaaggagatcggggctctgta
ggacccagtggtccagtcggtcctcccggatcaccaggggttccggggaatatcggacct
ccaggacaggtgatatatgtaaaaggggctgacctatcggctatcccaggaccacgagga
cctccaggagctcctggagaaactgggattcaaggaaatacaggacctaggggtgagaga
ggactaccaggaatgaaaggagatcagggagatccaggagaggatggctcaccgggtaaa
ccgggggcttcagtggatgtgaaaagagcgctgtctgattttggcattgaggtcagagac
ctgcagctggtgttagaaaagaaagatgtcctgctgagggaaatcgtagaacgaacagat
aaaggaccaaaaggggataaaggagattcgggagctccaggccctgctggggcagatggt
actcgagggtttccaggggagcgaggacaaaaaggtgatcaaggtgaaaaggggtctcct
gggccacagggtcctacaggcagagctatcggagagagaggccctgagggccctccagga
caggcaggagagcctggcaaacctggcatacctggagtaccaggacgagctggagaacta
ggggagattggcaaacctggcgaaaagggtgagagaggtgagaaaggagatagaggagag
gcgggtaaacctggggttaatggagtggcaggaccggcaggaccgaagggcgactcgata
gttcagtctgttcctggtccacggggtctgccaggccctcagggtgttaaaggagaggat
ggtgctcaaggaccccctggatctaaaggagagcggggagttgcaggtttccgtggagag
aaaggtgatagaggagaagtcggagaaaagggcagagatggtctccctggtttagctgga
gaacctggaaaacccggacaggatggaaagccgggcttgcctgggttcccaggagtgttg
ggcagaccgggaaaccctggagagacaggaattcgaggaccacctggaccgatgggtccg
aacggacctccgggaccaatgggtgtgaagggtgaccaaggagaggcagggataggggtt
caaggacctccaggaccacagggcatccgagggttgtctggacttacaggcacaccagga
gccattgggccacaaggacctccaggactcccaggacaaacgggagaaggaggaaaacct
ggggttcccggaagagatggaatacctggaaaggaaggaacacctggcttaccgggaaaa
cagggcatcgcgggaccagcaggacccccagggacaaaaggcgagcaaggggacagcgga
ccacctggaaaatcggttgctggaccccctggagtgaagggtgagccgggtccttcgggt
gaaactctgcctggtgtagcaggggagagaggcttacccggattgcaggggattaaagga
gatagaggaccagctggaatcaaaggtgaaaggggtgcatctggtgacccgggagaggca
ggtgaaaatggacaaagaggaccacccgggccgaaaggagctaaaggtgaagcaggtgtt
ggaatggttggtcctccaggacagcctggaccagcaggcttaaagggtgatactggtctc
ccaggccctccaggcccacctggacctcaaggtacatcaggaacaccaggactcgctggt
caaagaggggaagcgggtcaaccgggaaatccaggacctccaggagacagggggctgcaa
ggcttcataggcaaagcaggaaacccaggaacgcctggtaatgctggaccacctggacca
ccaggtactgcaggaacccctggggttaaaggagataaaggtgaggttgctgtaggagta
ccaggacagagaggagagagaggcgatcctggacctcggggagaagaaggacgacctgga
gcagatggagagagaggtcctccgggttttcctggtggcaaaggaggcagaggagaaaag
ggggaatcaggacctcaaggagagaaaggagagaagggagaaactctgttggttggtggg
cctcctggagagaaaggaaataagggcgaaacgggagatcgaggagctaaaggactacaa
ggtgaaaagggcgttaaaggtcaagaagggccaccgggggtacagggtctgcgtggagag
gctggagagaggggcgcggctgggttccagggggctcgtggtccaggaggacagaaggga
gagcccggactgccaggagttccaggagaagctggtacaccggggaaagatggcttccct
ggcatgagaggagagaagggagagatcggaatcatcggcatgcgaggaccaaagggagac
cgaggagccaagggggcgtgtggaccagagggacagaaaggagaaagaggcgacgccggg
atgaacggccgatcaggtttacctggaagaaaaggagagtcgggtgatgtgggatctcca
ggcgccaccggagttccggggaaggaggggctcgtcggacccaaaggtgaccgaggtttt
gatggcctaatgggaccaaaaggagaacaaggagaaaaaggtgaacggggtccccctggc
attcctggcccaccaggtcctcgaggtgtagatgggcctgctggactgacgggtcctcaa
ggacctgctggagttaaaggtcctgaaggactgcagggacagaagggtgagcgaggtcct
tcaggccctgctttggctggccctcgtggtatcccaggaatcccaggagagagaggagta
cagggagaaatcggtctcgatggagcgaaaggagagaggggagagccgggcatgacggag
gaagagattcgaacttatgttcgatctgagatgagccagcactgtgcctgtggaggtaag
tga
DBGET
integrated database retrieval system
