Clarias gariepinus (North African catfish): 128526582
Help
Entry
128526582 CDS
T10780
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128526582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128526582
03009 Ribosome biogenesis [BR:
cgar03009
]
128526582
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128526582
Spliceosome [BR:
cgar03041
]
Complex A
U1 snRNP components
U1 related factors
128526582
Complex B
128526582
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
Pre-60S particles
Helicases
128526582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
128526582
NCBI-ProteinID:
XP_053354558
LinkDB
All DBs
Position
6:complement(32323563..32331857)
Genome browser
AA seq
611 aa
AA seq
DB search
MPGYSDRDRGRDRGYGSSAPRFGGGRSGPPQSAKFGNPGDRLRKRHWNLDELPKFEKNFY
KEHPEVTRRSMQEVEQYRRAKEVTVKGRDCPKPIIKFHEATFPNYVMDVIKKQTWTEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVATEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INIGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLLQMAEDRG
GRSRGSRGNYKDDRRDRYSSGGRRDFGSYRDRDGDRGYGSGPKAQNGSYSGGSSYNKSNG
SSSNYSSNSYNSGGNPSAFGNQNFQNQPFQGNQAPAQNGMNHPPFPFNPPQPPQQPPQPM
VPYPMPPAFPQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggacgagatagaggttatggcagcagcgctcct
cgattcggcggaggccgcagtggccctcctcagtctgcgaaattcggcaatcccggtgac
agactgcggaaacgtcactggaacctcgacgagcttcctaaatttgagaaaaacttctac
aaggagcacccggaagtcactcggagatcaatgcaagaggtagaacagtaccggagggca
aaagaagtcacagtcaaaggcagagattgcccaaagcctattattaaattccatgaagcc
accttcccaaattatgtaatggatgtaataaagaagcagacatggactgagcccactcct
atccaagctcaaggctggcccctggcgctgagtggaaaagacatggttggcatcgcccaa
accggctctggaaaaaccctggcatacctgctaccagccattgtgcacatcaaccaccag
ccgttcctcgaacatggagacggacctatttgcctggttctcgcccccactcgtgagctg
gctcagcaggtgcagcaggtcgccacggagtatggtcgagcctctcgcctaaagtccacc
tgcatctacggaggagctcccaaaggaccccagatccgtgaccttgagagaggtgttgag
atctgcattgccactcctggtcgtctgatcgactttctagaggcaggaaagaccaacctg
cggcgctgcacatacctggtgctggacgaggctgaccgcatgctggacatgggcttcgaa
ccacagatccgcaaaattgtggatcagatccgccctgacaggcagactctaatgtggagc
gccacttggcccaaagaggtccgtcagctggccgaagattttctcaaggagtatgttcag
atcaacattggagctctacagctcagcgccaaccacaacatcctgcagatcgtcgatgtc
tgtaacgacggagaaaaggatgacaaactaatccgcttgctggaggagatcatgagtgag
aaagagaataagaccatcatctttgtagagaccaaaagacggtgtgatgaactgacgcgg
aggatgaggagagacggatggcctgccatgggaattcatggagataaaagtcagcaggag
agagactgggtcctgaacgaattcaagtacggtaaagcgtgcatcctcatcgcgaccgac
gtggcctcacgtggattagatgtggaggatgtgaaatttgtcatcaattatgactaccct
aactcctctgaggactatattcaccgaatcggccgtacggcccgcagtcagaaaacgggc
acggcctacaccttctttacgcccaacaacatgaaacaggccagtgacctgatctcggtc
ctgcgtgaggccaaccaagccatcaaccccaaactgctccagatggcagaggaccgagga
ggtcgttcccgaggcagtcggggaaactacaaggacgaccgtcgggaccgctattccagt
gggggtaggagagattttggtagctatagagatagagacggtgacaggggttacggtagc
gggcccaaagcacagaacggcagttacagcggaggcagtagctacaacaaaagtaacggt
agtagcagtaattacagtagcaacagctacaacagcggaggaaacccgagtgcttttgga
aatcagaacttccagaaccagccattccaagggaaccaggcaccagcacagaacggaatg
aaccaccctccattcccctttaaccctccacaacccccgcagcagcctccacagcccatg
gttccctaccccatgccccctgctttcccccagtag
DBGET
integrated database retrieval system
