Clarias gariepinus (North African catfish): 128526585
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Entry
128526585 CDS
T10780
Symbol
sdc4
Name
(RefSeq) syndecan-4
KO
K16338
syndecan 4
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04512
ECM-receptor interaction
cgar04514
Cell adhesion molecule (CAM) interaction
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128526585 (sdc4)
04514 Cell adhesion molecule (CAM) interaction
128526585 (sdc4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128526585 (sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgar00535
]
128526585 (sdc4)
Proteoglycans [BR:
cgar00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
128526585 (sdc4)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
TM_ErbB1
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
128526585
NCBI-ProteinID:
XP_053354564
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All DBs
Position
6:27935921..27945564
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AA seq
192 aa
AA seq
DB search
MLKVSFALFLLAAAAFAESVRETETWMPPKAGQSNDDMDSSGDFIFPNEDSTTVDDEDDD
NYPDLDDISGSGDDTSLVDEDLDIIRTEDGDNHIPDMEPPVQPQPTANDIKLVRQNEVGH
PPSVQLSHAGEQNIFNKTEVLAAVIAGGAVGLLFAVLLILLLIYRMKKKDEGSYDLGKKP
IYKKAPTTEIFA
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaagtgtcctttgcgttgtttttattggccgctgctgccttcgccgagtcggta
agggagacagaaacatggatgcctccaaaggctgggcaatcaaacgatgacatggattca
tctggtgatttcatttttcctaatgaggacagcacaacagttgatgatgaggatgatgac
aattacccagacttggatgacatatcaggctctggtgatgacacatcattagttgatgaa
gacctagatataatcaggactgaagatggtgataaccacatcccagacatggagcctcca
gttcagccgcagccaacagctaatgacatcaagctggtgagacagaatgaagttggtcac
cctcccagtgtccagttgtcacatgcaggagaacagaacatctttaacaagacagaagtg
ctggccgctgtcattgctggtggtgctgttgggttgctttttgctgtgcttctcatcctc
ctcctcatctaccgcatgaagaaaaaagatgaaggcagctatgatttgggcaagaaaccc
atttacaagaaagctcccaccaccgagatctttgcatga
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