Clarias gariepinus (North African catfish): 128526783
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Entry
128526783 CDS
T10780
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04148
Efferocytosis
Brite
Membrane trafficking [BR:
cgar04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128526783 (tgfbrap1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
128526783
NCBI-ProteinID:
XP_053354908
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Position
6:30927996..30946414
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AA seq
864 aa
AA seq
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MSVKAFELVPAVKREQLAGEKVRIGVECIECCGQHLYVGTNDGFIHHFLLEERTTAKGQL
SFSSEKLLHKQLGLKKPPSELKAVSALERLIVLCDGVILLVDMVTLEPVASGGTKLKGVT
VFCVNENPVTAEPFCVEMAVASARRRSVHICTVHEDRVQILKEVATPDQPCDLSVDGYFL
CLALPTRYVILNYSSGASQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVNWSETVIGAAVCFPYVVALDEGFVTVHSMLDQQLKQTLPFREGHILQDFEGKVVLA
STKAVYVLVPLPLERQVQDLLAGHRVEEALTLIEGAQRNIPKDKFQILHKRILQQAGFIQ
FGQLQFSEAKEHFRKGQLDVRELISLCPLLLPASSSFTRCHPPLHEFADLNHLAQGDQEK
VQRCKRFLISYLREVRASESANGFRQDVDTALLKLYAEAGHKGLLELLASDNSCLLADST
PWLEKHHRYFALGLLYHYNGQDAAALQLWVRVVNGDLQDSTHADLFDYVVDFLSSCKNLD
LVWKYADWALQKDQKLGVQIFTKRAVSKEQTRQPNPDEVITYLQKHNKALVLYLEHLVLE
RRLQKEKYHTHLAVLYADRVLALISRTSATEEQLSLARQKLQRLLRESNLYRVQLLLGKL
QDSELLLMERATLHGKLEEHDKALHILVHQLKDSVAAQEYCTWASDHKNRGKIFHQLLRV
YLDPDVPGGPRTVEAVDLLNRNAEVFDAPKVLELLPEAWSLPLLRPFLCGAVRASMHARH
TSQIALGLARAENLQLHHDRLKYRGGPIVVSEKKGCRLCHNTFTEPDCVCLPGGTPVHTH
CATQKLKGSPTKRQKDHDYTSNHT
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggccttcgagctggtgcccgctgtgaagcgggagcagttggctggtgag
aaagtgcgcatcggtgttgagtgcatcgaatgctgtggccagcacctgtacgtgggcacc
aatgatggcttcatccatcacttcctgctggaggagcgcaccacagctaagggccagctg
tcttttagctcggagaagcttctccacaaacagctggggctcaaaaagccaccgtccgag
ctaaaagctgtttcggccctggagcgccttatcgtcctgtgcgacggtgtcatcttgcta
gtggatatggtcactctggaaccagttgcatctggagggaccaaactaaaaggcgtaacg
gtgttctgtgttaacgagaacccggtgacagccgagcctttctgcgtggagatggcggtg
gcgtctgcgcggcgtcgttctgtacacatttgcactgtgcacgaggaccgtgtccagatc
ctgaaggaagtggctactcctgatcagccgtgtgatctcagcgtggatgggtacttcctg
tgcttggctctccccacacgatatgtgatcctgaactatagctcaggtgcgtcacaggac
ctgttcccatacgacagtgaggagaggaagcccattgtcaaaaggattggcagggaggag
tttctcctggctgcaccaggaggccttgggatgtttgctaacgctgagggcatctcccag
cgtgccccagtcaactggtcagagacggtgattggcgcagctgtctgtttcccgtacgtt
gtggctctggacgagggctttgtaacggttcacagcatgttggatcaacagctcaaacag
acacttccattcagagaaggacacatacttcaggactttgaagggaaagtggtgttggct
tccacaaaggcagtgtatgtgctggtgcctttgcctctagaaagacaggttcaggacctg
ttggcaggacacagagtggaggaggcactgaccctgatcgaaggtgcacagagaaacatt
cctaaagacaagttccagatattacacaaaagaattcttcagcaggcgggattcatccag
tttggccagcttcagttttctgaagctaaagagcattttaggaagggccagctagacgta
cgagagttgatctcactgtgcccactgctgctgcctgcctcatcatcattcacgcggtgc
catcctccactgcatgagtttgctgatctcaaccatctggcacagggtgatcaggagaag
gtgcagcgctgcaagcgctttcttatcagctacctgcgtgaagtgcgtgccagcgagagt
gccaacggcttcaggcaggatgtagacactgcgctgctgaagctttatgccgaggcgggt
cacaagggcctgctggagctactggcctcggacaactcctgcctgctggccgacagcaca
ccctggctagagaaacaccacaggtattttgcactcgggctcctgtatcactacaacggc
caggatgctgctgctctacagttgtgggttcgagtcgtcaacggggatctccaagactcc
acacatgctgatctttttgattatgttgtggatttcctgagctcatgtaagaacctggac
cttgtatggaagtatgcagactgggccttacagaaggaccagaagcttggagtacagatc
ttcactaagagagctgtttctaaagagcaaaccaggcagccgaatcctgacgaagtgatc
acgtacctacagaagcacaacaaggctctggttctgtacctggaacatttggttctagag
aggaggttacagaaagagaagtaccacacacacctagctgtgctgtatgccgaccgagtc
ctcgctctcatctcccgaacctcggccacagaagagcagctctctttagcccgacagaaa
ctgcagagattgctcagagagtccaacctgtacagagtccagctgctactgggtaaactg
caggactcggagctgctgttaatggagagagcgacactacacggtaagctggaagagcac
gataaagcactacatatcttagtgcaccagctgaaggactctgtcgctgcacaggaatat
tgcacatgggcatccgatcacaaaaaccgtgggaaaattttccatcaactgttgcgcgtg
tacttggacccagatgtgcccggagggccgcggactgttgaggccgtagacttgctgaac
cgcaacgctgaggtttttgatgccccaaaagttttggaacttcttcctgaagcgtggtct
ttacccttgctccgcccattcctgtgtggggctgtgagggccagcatgcacgctcgccac
acctcccagatcgcactggggctcgcacgagctgagaacctgcagctgcaccacgacagg
ctcaagtatcgaggaggtccgatcgttgtgtcagaaaaaaagggatgccgcctgtgccac
aacacattcaccgagccagactgcgtgtgcctccctggtggcacgcctgtccacacacac
tgtgccacacagaagcttaagggctcacccacaaagcgacaaaaagaccacgactatacc
agcaatcacacatga
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