Clarias gariepinus (North African catfish): 128527007
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Entry
128527007 CDS
T10780
Symbol
rhot1b
Name
(RefSeq) mitochondrial Rho GTPase 1b
KO
K07870
mitochondrial Rho GTPase 1 [EC:3.6.5.-]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128527007 (rhot1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
cgar03029
]
128527007 (rhot1b)
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
cgar04031
]
128527007 (rhot1b)
Mitochondrial biogenesis [BR:
cgar03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
128527007 (rhot1b)
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
128527007 (rhot1b)
GTP-binding proteins [BR:
cgar04031
]
Small (monomeric) G-proteins
Rho Family
Miro
128527007 (rhot1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF_assoc_2
EF_assoc_1
Ras
Roc
EF-hand_7
EF-hand_6
SRPRB
EF-hand_1
Arf
RsgA_GTPase
PduV-EutP
MMR_HSR1
EF-hand_5
Dynamin_N
AAA_22
AAA
AAA_5
FeoB_N
AAA_25
nSTAND1
MMR_HSR1_Xtn
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
128527007
NCBI-ProteinID:
XP_053355239
LinkDB
All DBs
Position
6:39916788..39937410
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AA seq
662 aa
AA seq
DB search
MRKDVRILLVGEPKVGKTSLIMSLVSEEFPDVVPYKVEEITIPADVTPERVPTHIVDYSE
AEQTDEQLYQEISKANVICIVYAVNNRKSLEKVTSHWIPLINERTDKDSRVPLILVGNKS
DLVEQSSMEAVLHIMNKYTEIETCVECSAKKLKNISELFYYAQKAVLHPTGPLYCPERRQ
MKPACVRALTRVFKISDLDNNGVLSDSELNFFQRVCFSSPLAPQALEDVKKVVKKSTPDG
VCEDGLTLQGFLFLHTLFIQRGRHETTWAVLRHFGYDDDLELHQDYLFPLLRVPADCSTE
LSHDASLFLQSIFDKHDKDRDGALNPGELKEVFDVFPYMPWGPDVNNTVCTNDQGWITYQ
GFISQWTLTTYLDVQRCLEYLGYLGYSIVAEQESQAAAITVTRSKCVDLQQKQTQRCVFL
CNVFGSRGSGKSSFLQAFIGRNLNCQQTIRDEHKSHYAINTVHVYGQEKYLLLREICSDL
DFVSASDLSCDVVCLLYDISDPESFAYCVWVFKQCLADSKLPCLMVAMKSDLQEEKQQHD
VTPLEFCRTHLVPPPLAYSANTPATPTRDVFGKLATVATYPHLRLRCMCTCNRCTFCLCQ
NFLNSELLHAVKGKLYTLVFSRMAPPVVDTDGSALLFWKLSCGAALFALLGFSVYRVLVK
PR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaagatgtgcggattttactcgtcggagagcccaaagtggggaagacgtctctg
atcatgtccctggtcagcgaggagttccctgacgtggttccctacaaagtggaggagatc
accatccccgctgacgtcacgcccgagagagtccccacacacatagtggactactcagaa
gctgagcagacagacgagcagctttatcaggagatctccaaggcgaacgtcatatgcatc
gtttacgccgtcaataacaggaagtcgctggagaaagtgacgagtcactggatcccgctg
atcaacgagaggacggataaagacagcagggttcctctaatattagttgggaataagtct
gatctggtggagcagagcagcatggaggccgtcctgcacatcatgaacaaatacacagag
atcgagacctgtgtcgagtgttcagcgaagaaactaaagaacatctccgaactgttctat
tacgctcagaaagcagtacttcatccaacaggcccgctttactgccccgagcgcagacag
atgaagccggcgtgtgttcgagctctcacccgtgtgtttaaaatttccgacttggacaat
aatggcgtcctcagcgacagcgagctaaacttcttccagagagtgtgtttcagctcgccg
ctcgctcctcaggctctggaggacgtgaagaaggtggtgaagaagagcacacctgacgga
gtgtgtgaggacggactgactctgcaaggatttcttttcctccacacactcttcatccag
agggggcgccacgagaccacctgggctgtgctccgccattttggctacgacgacgacttg
gagctacaccaggactaccttttccctttgttaagagtcccagcagactgcagcactgag
ctcagccacgacgcctcgctgttcttgcagagtatctttgataaacacgacaaggaccgg
gacggtgctctgaaccccggcgagctaaaggaggtgtttgatgtgtttccctacatgccc
tggggtccggacgtgaataacactgtgtgtacgaacgatcagggctggatcacataccag
ggcttcatctctcagtggacattaacgacgtacctggacgtgcagcggtgcctggagtac
ctcgggtacctcgggtactccattgtagcggagcaggagtctcaggccgccgccatcaca
gtgacccgcagtaagtgtgtggacctgcagcagaaacagacgcagcgctgcgtgttcctc
tgtaacgtattcggcagcagggggagtggaaagagcagcttcctgcaggccttcatcggt
cgcaacctcaactgccagcagacgatcagagacgaacacaagtctcactacgccattaac
acggtgcatgtttacggtcaggagaaatacctgctgctgcgtgaaatctgctcagatttg
gacttcgtgtctgcgtctgatctcagctgtgatgtcgtgtgtctgctttatgacatcagc
gaccccgagtcgttcgcctactgcgtctgggtgtttaagcagtgtctggcggactctaag
ctgccgtgtctgatggtggcgatgaagtcggacctgcaggaggagaagcagcagcacgac
gtcacgcctctggagttctgcagaacacacctggtccctcctccgctggcgtacagcgcc
aacacgccggccacgcccacccgagatgtattcggcaaactcgctaccgtggctacgtac
ccgcacctgcgtctacgctgcatgtgtacctgtaacaggtgcaccttctgcctctgccaa
aatttcctgaactctgagctcctccacgctgtaaaaggcaaactctacacactcgtcttc
agcaggatggcgcccccggtggtggacactgacggctcggcgttgttgttctggaagttg
agttgtggagcggctctgttcgctctgctgggcttcagtgtgtaccgagtcttggttaaa
ccccgatga
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