Clarias gariepinus (North African catfish): 128527010
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Entry
128527010 CDS
T10780
Symbol
tnrc6c2
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128527010 (tnrc6c2)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128527010 (tnrc6c2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
Ago_hook
RRM_1
RRM_occluded
UBA_NBR1_C
TIG
ComP_DUS
THOC7
Motif
Other DBs
NCBI-GeneID:
128527010
NCBI-ProteinID:
XP_053355243
LinkDB
All DBs
Position
6:complement(40066606..40089511)
Genome browser
AA seq
1567 aa
AA seq
DB search
MFCHTRAHTHTLGTLSETVLLNQCGLEAQHENSLWGDPATTCSNRTNWNQVTINEKDTKP
WTYSSPESLECVLDADTPALVNLSMSMATGASQHSHYPISKASVNHSSSMFSGQGGPNRG
WASEGKTDVSMGTRGQSNWGSSNLNLNPSANPAAWPILGHDAPGVGTRPGGMGGSSSVPS
NVCGPGGIAPVQGTNGNANLVGDCAWGNPDTPEQHQTPTSMTFSMEPTNLKTDGLNVKTE
PMSPVDGWGRNMSQSPTESAAGDGTARWGKGDTKSGESKDSGGISSWGQGGGDANWGHWG
KQSSTEGTGWDGNDGPTQESMNSWGTDAPGSEGSKDSSEGRERRRESSSSMDVPLLPRQD
LDPRVLCNSGWGQTPVRQHTVWEMDENLGSKDEGGTESWGTSSNAPSSGSPPHAGCANPN
LNVPPRMESGSKTEGPPRVMPAPRWGGSSSPTNQASTGWGEPPANKKVSNGSVGSWGEKM
PDGPSPSGSSGQFWGSEDKSSNWDDGHSQVKSQPSGNGHSSSSNWGNCASGDWGEPSEGK
MEGSRTSSWDGDGGSWKETQKGWGKTAPPAGENWRDSQRSNGPVQGWGAKNPQESMGSWG
GPNSVKQGGSNWRSTGRQDPGDESTGWEEPSPSSIRRKMEIDDGTATWGDPNSYRTCVNM
WDRNNPSSQGNPATSNSGGNTINHTGSNHHSHAPAPNHSDGNNNGSPNQLGAPQNRIPKV
NPGWGELPNVQPKPESWGEPDSSSSTVDNGTSAWVKSPKAAGVWGENGHESTGSFGRGSG
ISKPVPKTMQDSWGSGGGDELAVSSSQWDPEDGDMWTSPTSQDNSSSCNSWNQPKKGVQK
GKIPTKQDEVWIMNRLIKQLTDMGFPRDPAEEALRSNNMNLDQAMSALLEKKSDGEKRGM
RTLLCRPPNLSKDTSLDRSAFLDKDGGLSEDTPTSPFIHSSGLKLTNNSLPSHGMGGASP
GLMQNLNSRQMNGMFGSNGAAQSRAPPPQALNSTHHPPLRAQVPQFLSPQVQAQLLQFAA
KNIGLNPALLTSPINPQQMTLLYQLQQLQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVA
RTISNMQQQIQQHQRQLAQALLMKQQQQQQHQAPSAHSYPSLGKPNLDAFPGNSQASAGL
SMSDLHTKEPHASPSSFGPYPLSGLNGSVGVGCMDALKDTPPQPQSRLSQWTHTSSIDSI
STTTSPSAPPSSHAPNIKPVMEDSFSPYNLMSSCQSPNSPLGAPESWPPGKNTNDKMANG
SSVNWPPEFCPGVPWKGLQNIDPESDPNVTPGSVSGCPTINTNIQDVNRYLLRDRNGGKL
LDMKSTWSTGSISHTQASLSNEMWKIPVGGRSSGTVPRPPPGLTNNKHNNNWTPGPLSNS
WSRDYSSESTGWTADSSSRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLSLPQGNA
LVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVTRFFSQAQSFPPSGSSSHPALGQ
WGTSTTKGGSNPPGGANGAGAELLWGGVQQPYSSLWGPINGEESRVMGSPVPVNTLLPGD
LLSGENM
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgttctgccacacgcgcgcacacacacacacgctcggaactctctctgaaacagtgctg
cttaatcagtgtggcctggaagcccagcatgagaattccctctggggcgacccagccacc
acctgcagcaaccgtaccaactggaatcaagtaactattaatgaaaaggacactaaacct
tggacgtacagttccccagagtcattagaatgtgtcttggatgctgacacaccagcactt
gtgaatctaagcatgagtatggctacaggagcgagccaacacagccactacccaatcagc
aaagccagtgttaatcactcctcaagtatgttctctggtcagggtggccccaacaggggt
tgggcctctgagggcaaaactgatgtgtccatgggtaccagaggccagtccaactgggga
tcttcaaatctaaatttgaaccccagcgcgaaccctgctgcttggcccatacttggacat
gatgccccaggagttgggaccaggcctgggggtatgggtgggtcaagttcagtcccatcc
aatgtctgcggcccaggaggcatcgctcctgttcaaggaaccaatggaaatgcaaacctt
gtgggagactgtgcatggggaaacccagacaccccagaacagcaccagactccaacaagc
atgaccttcagtatggagcctacaaaccttaaaactgatggactgaacgttaaaacggag
ccgatgagccctgtggacggatgggggagaaatatgagtcagtctcccactgagtcagct
gccggagatggtactgctcggtggggtaaaggagacacgaagagtggggaatcaaaagac
tctggtggcatctcctcttggggccagggaggaggtgatgcaaactggggtcactggggc
aaacagtcaagcactgaaggtacagggtgggatggaaatgatggtccgacacaagagtct
atgaattcctgggggactgatgctccgggcagcgaaggtagcaaagacagcagtgaagga
cgcgaaagacggagagaaagttcctccagtatggatgttccacttctgccaaggcaggac
ttagatcctcgtgtgctgtgcaactctggttggggacaaaccccagtccggcagcacacg
gtctgggaaatggatgaaaatcttggttccaaggatgagggtggcactgaatcttggggt
acttcctctaatgcaccttcatctggatcaccacctcatgcaggatgtgccaatcccaac
ctaaatgtgcctcctaggatggagtctgggagcaaaacagagggacctcctcgagttatg
ccagcaccacgctggggaggatcatcctcaccaacaaatcaggcgagcactggatgggga
gagccacctgctaataagaaagtgtccaatggctctgttggtagttggggtgagaagatg
ccagatggccctagccctagtggatctagtggccaattttgggggtcagaggataagtct
tcaaactgggatgatggtcattcccaggttaagtcacaacctagcggaaatgggcatagt
tcttcctcaaactggggaaattgtgcaagtggagattggggagagccttcagaaggaaaa
atggaaggatctcgtacttcctcttgggatggagatggagggagctggaaggaaactcag
aagggctgggggaaaacggcgccaccagcaggtgaaaattggcgtgactcccaacgctca
aatggtcctgtgcaaggttggggtgcaaagaatcctcaagaatccatggggtcatggggt
ggtccaaactctgtaaagcagggtggttctaactggaggtctacaggaaggcaggatcca
ggggacgaatctacaggctgggaagagccttctccttcctcgatccgaaggaaaatggaa
attgatgatggaaccgcaacatggggagatcctaattcctacagaacctgtgtaaacatg
tgggacagaaataacccctcctcccagggcaacccagctaccagtaacagcgggggcaac
actatcaatcatacagggtctaaccaccacagccatgctccggcacctaaccactctgat
ggtaacaacaatggttctcctaaccagctaggcgctcctcaaaataggatccccaaggta
aacccaggctggggagagcttccaaacgttcagcccaaacctgagtcctggggggaaccg
gattcctcgagctccacggtggataacggcacgtccgcctgggtgaagtcacccaaagcc
gctggagtctggggggaaaacggccacgaatccactggatccttcggcagaggctcagga
atctccaaaccggtccccaaaactatgcaagacagctgggggtccggtggtggggacgag
cttgctgttagcagcagccagtgggaccccgaggacggggacatgtggactagccccacc
tcccaggacaactcttcttcctgtaattcctggaatcagcccaagaaaggagtacagaag
gggaaaatcccgaccaaacaggatgaagtttggatcatgaaccgactaatcaagcagctc
acagacatgggcttccctagggatcctgcagaggaggcactcagaagtaacaacatgaat
ctcgaccaggctatgagcgccctgctggagaaaaagagtgatggagaaaaacgagggatg
aggacgctgttgtgtcgtcccccaaacctctctaaagatacgtcactggaccgatccgcc
ttcctggacaaggacggtggattatcagaggacacgcccacttccccctttattcattct
tctggcctcaaactgaccaataacagccttcctagccatggcatgggcggagcctcacca
ggactaatgcaaaacttgaacagcagacagatgaatggaatgttcggcagtaacggagca
gcacaatccagggctccaccccctcaagcactaaactccacccatcaccccccactacgt
gctcaagtgcctcagtttctttcccctcaggttcaagcacagctcttgcagtttgcagca
aaaaacattggcctgaatcctgcacttttaacctcaccgataaatcctcagcagatgacc
ctgctttaccagctccagcaactgcagatggcgtatcagcgtttgcagattcagcagcag
atgatgcaagctcagcgaaatgtttctggtcccattagacaacaggagcagcaagttgca
cgtacaatctcgaacatgcagcagcagattcagcagcaccagaggcagttagctcaggcc
ttgctgatgaagcagcagcagcagcagcagcaccaggccccgtccgctcactcttacccc
agcctcggcaagccgaacctggacgccttcccaggaaactcccaggcttccgcaggcctg
tccatgtcagacctgcacaccaaagagccccacgcgtctcccagctccttcggcccgtac
cctctgtccggtctgaacgggagcgtcggtgtcggctgcatggacgctctgaaggacacg
cccccccagcctcagtctcgcttatcccagtggactcacaccagctccatcgactccatc
agcaccaccaccagccccagtgctccgccctcgagccacgcccccaacattaaacccgtc
atggaggattccttcagtccttataacctgatgtccagctgccaatctcccaacagcccc
ttgggggcaccagagagctggccaccaggcaaaaacactaacgacaaaatggccaacggc
agcagcgtcaactggcccccggagttttgtcctggagttccatggaaagggctgcagaac
atcgaccctgagtccgaccccaacgtgactccaggaagtgtttcaggctgccccacaatc
aacaccaacattcaggacgttaatcgctatctgctccgggacaggaacggaggtaaactg
ttagacatgaagtccacctggtccacaggctccatctcacacactcaggcctcgctgtcc
aatgagatgtggaagattcctgtgggtgggcggagctccggaactgtgccccgcccccca
ccgggcctcactaataacaaacacaacaacaactggacacctggaccgctgagcaacagc
tggagcagagactacagctcagagagcactgggtggaccgccgacagctccagcaggacc
agtagctggcttgtgttgcgtaatctcactcctcagatcgacggttccactctgaggact
ctgtgtatgcagcatgggccgctcattacgttccacctcagtctgccacaggggaacgct
ctggtgcgctacagctccaaagaggaagcagctaaagctcagaaatctctgcacatgtgc
gttctgggtaacaccaccatcttggccgagtttgccggagaggaggaagtgacacgtttt
ttctctcaggctcagtcgttcccgccctccggcagctcctcccaccccgccctgggtcag
tggggcacctcgaccactaaggggggcagtaacccgccgggcggagctaacggggcaggg
gcggagctcctgtggggcggagtccagcagccgtactccagcttatggggtccgatcaac
ggcgaggagagccgagtcatgggaagtcccgtccccgtgaacacgctgctcccgggagac
ctgctgagcggcgagaacatgtag
DBGET
integrated database retrieval system
