Clarias gariepinus (North African catfish): 128527204
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Entry
128527204 CDS
T10780
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128527204 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128527204 (ddx3xb)
03041 Spliceosome [BR:
cgar03041
]
128527204 (ddx3xb)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128527204 (ddx3xb)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128527204 (ddx3xb)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128527204 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
128527204 (ddx3xb)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128527204 (ddx3xb)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128527204 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
128527204
NCBI-ProteinID:
XP_053355545
LinkDB
All DBs
Position
6:complement(28723221..28734795)
Genome browser
AA seq
729 aa
AA seq
DB search
MSHVAVENAHGLEQQIAALDLKSDVQGGGTGRRYIPPHLRNKEASKSDAPGGWDAGRSNG
FVNGYHDGRDNYMNGSSNFGNRGPVRNDRGGRGGGYRSRGNGSYVTQPVQNTGFGYDNKD
GGAWNAPKDNAYNSFGGRSDRNKSTFYNDRGSSRGRYERGGFGGGGNSRWVDDSRDEEDW
SKPLTPNERLEHELFSGSNTGINFEKYDDIPVEATGHNSPQHIESFQDLDMGEIIMGNIT
LSRYSRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQATKN
NVQENGRYGRRKQYPLSLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRD
LERGCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPP
KGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL
DLLNATDLVLFKVIPGEVQDSTWENGEKPGKDSLTLVFVETKKGADALEDFLYREGYACT
SIHGDRSQRDREEALLQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI
GRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKGSSRGRSK
RFSGGFGARDYRQTSSSSTTSGGFGSRGTRSAGGHGGNRAFGGAKGGFGNFYNSDGYGGN
YSQVDWWGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgttgagaatgcacacggtctagaacagcagattgctgccctagac
ttgaaatctgatgttcaaggaggaggcactggcaggcgttacattccacctcatttaagg
aacaaggaggcttccaagagtgacgctccaggtggatgggatgctggacgaagcaatgga
tttgtaaatggctaccatgatggccgtgacaactacatgaatgggagcagcaattttggt
aatcgtgggcctgtgcgtaatgaccgtggaggcagaggaggtggttacagaagcaggggc
aatggctcctatgtcacccaaccagtgcaaaacacaggctttggctatgacaacaaagat
ggcggagcatggaatgcaccaaaggataatgcctataatagcttcggtgggcgttctgac
aggaacaaatccaccttctacaatgatcgtggatcttccaggggaaggtatgagcgtgga
ggtttcgggggtggtggaaatagtcggtgggttgatgattccagagatgaagaggactgg
tccaaacccctcactcccaatgaaaggctggaacatgagctattttctggaagcaacact
gggataaactttgagaaatatgatgacattcctgttgaagccactggccacaactcccct
cagcatattgagagttttcaggacctagatatgggtgagattattatggggaacatcacc
cttagtcgctactctcgccccactccagtccagaaacacgccattccaattatcaaatcc
aagagagacctcatggcgtgtgcacagacgggttctggtaagactgcagcattcttactg
ccagtgctgagtcaaatatacacagatggaccaggagaggctttacaggctacaaagaac
aatgtccaggaaaacggtagatatggacgccgtaagcagtaccccctttctctggttttg
gctccaactagggaattggctcttcagatctatgatgaggctagaaagtttgcgtatcgt
tctcgggtacgcccatgtgtagtatatggaggagctgacattggccagcagattcgtgac
ctggagaggggctgccacctgctagttgccacacctggtcgtcttgtggatatgatggag
aggggcaagattggtttggatttctgcaactacttggtcctggatgaagctgacaggatg
ttggatatgggttttgaaccacaaatccgtcgtattgtggagcaagacactatgcctcct
aaaggattgcgccaaactatgatgtttagtgccacctttcctaaggagattcagatattg
gcccgtgacttcctggaagattacatcttcttagctgtgggccgtgtgggctccacatct
gagaacattacccaaaaagtggtttgggttgaggaaaatgataaaagatccttcttgctt
gatcttctgaatgccacagatctggttttattcaaagtcataccgggcgaggttcaggac
agtacttgggaaaacggtgagaaacctggtaaagactctttgacactggtgtttgtggaa
accaagaaaggtgctgatgcactggaggactttctgtaccgtgagggctacgcctgcaca
agtattcatggtgaccgttcacagagagaccgggaagaggctcttcttcagttccgttct
gggagatgcccaatcctggttgccactgctgtagctgcacggggtctagacatctccaat
gtgaaacatgtcatcaacttcgacctgcccagtgacattgaggagtatgttcatcgcata
ggtcgtacaggccgtgttggaaatcttggtcttgcaacctcattctttaatgacaagaat
agcaacattacaaaagacctcctcgacatcctggtggaggccaaacaggaagtcccatcc
tggctggaaagcctggcttatgagcaccagcacaagggtagcagccgtggccgttcaaag
aggttttctggagggtttggagccagggattaccggcaaactagcagcagcagcaccact
agcggaggatttgggagtcggggcactcgtagtgctggtggccatggtggtaaccgtgca
tttggtggcgccaaggggggatttggaaatttctacaacagtgatggctatggaggaaac
tactctcaggtggactggtggggaaactaa
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