Clarias gariepinus (North African catfish): 128527221
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Entry
128527221 CDS
T10780
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03022
Basal transcription factors
cgar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128527221 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
128527221 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128527221 (ercc3)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128527221 (ercc3)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
128527221 (ercc3)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128527221 (ercc3)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128527221 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
128527221
NCBI-ProteinID:
XP_053355576
LinkDB
All DBs
Position
6:complement(36009186..36019776)
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AA seq
782 aa
AA seq
DB search
MGKKEKGDRERKSKKRYYEDDDEDESVPDTDSQEAVPSAAGKQVDESSTKVDEYGAKDYR
LQMQLKTDNSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPIHVHEYKLTAYS
LYAAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDPVIRDCRLRTGDGEEPELITEVISNKPAIAKTQQDNGGASTSQSADGQQGS
SQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRNDT
VNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRC
LVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSW
EAERVMDWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLN
FLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYHEYVAIKTKKRILLYTMNPNKF
RACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPK
INTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYS
LVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTREEQQQLLQKVLAATD
LDAEEEVVTGEFGGKSQFSRRTGTMSSMSGADDAIYMEYHTSRGSKGAVGKNIHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaaggagaagggtgaccgagagagaaagtcaaagaaacgctattacgaggat
gatgacgaggatgagtcagtccctgacaccgattcacaggaggccgtaccctcggcagcc
ggcaagcaggtcgatgaatccagcaccaaagttgatgaatatggagctaaagattacaga
ctacagatgcagttgaagacggacaattcatctcggcctctgtgggtggctcctgatggt
catatcttcctggaggcattctcaccggtctataagtacgcccaggactttctggtggcc
atcgccgagccagtgtgccggcccatccatgtgcacgagtacaaactgaccgcgtactcg
ctctatgctgctgtgagcgttggcctgcagacctcggacatcatcgagtacctgcagaag
ctcagcaagacgtctgtccctgatggcatcgtccagttcataaagttgtgcacagtgagc
tacgggaaagtcaagctggtcctaaagcacaacaggtattttgtggaaagcgctttcccg
gacgtgatccagcgactgctgcaggaccctgtgatccgagactgtcgtctccgcactggc
gatggagaggagcctgaactgatcacggaggtcatctccaacaaacctgcaatcgcgaag
acgcagcaggataacggcggtgcgtccacgtcacagtcagcggatggacagcaaggtagt
tcccaggtccctgaggacatcttcagctattatgaacagatggacaaagaggaggaggaa
gaggaagagacgcagaccgtctcattcgagatccgccaggagatgatcgaggagctgcag
aagcgctgtatccaactggagtaccctctgttagccgagtacgacttccgcaacgacacg
gtcaaccccgacatcaacatggacctgaagcccaccgccgtgcttagaccgtaccaggaa
aagagcctgcgcaagatgttcggcaacggacgagcgcgctccggcgtcattgtcctgcca
tgcggagccggaaagtctcttgtaggagtcacggcagcctgcaccgtacgtaaacgctgc
ctggtgttggggaactcatccgtgtcggtggagcagtggaagtcccagtttaagatgtgg
tcgaccatcgacgactcgcagatatgccgcttcacatcagacgccaaggacaagcccatc
ggctgctcggtggccatcagcacgtactccatgttgggccacaccaccaagcgctcctgg
gaggccgagcgagtcatggactggatgcgcagtcaggagtgggggctcatcatccttgac
gaggtccacacaatcccagcaagaatgttcaggcgcgtcctgaccatagtccaggcccac
tgcaagctgggtttgactgcgacgctggtgcgagaggacgataagatcgttgatctcaac
ttcctcattgggcccaaactgtttgaagccaattggatggagctgcagaacaacggctac
attgcaaaagtacagtgtgctgaggtgtggtgtccaatgtccccagagttttatcacgaa
tacgtggctattaagacgaagaagcgcatcctgctttataccatgaaccccaacaagttc
cgcgcctgccagttcctcatccgcttccatgagagacgcaacgacaagatcatcgtcttc
gccgacaacgtcttcgcgcttaaggaatacgccatccgcctcaacaagccgtacatttat
gggcccacatcacaaggggagcgaatgcagatcctccagaatttcaagcacaacccaaag
atcaacaccatttttatctccaaggtaggagacacgtctttcgatctgcctgaggcaaac
gtcttgattcagatctcatctcacggaggctctcgtcgtcaagaggctcagcgactaggc
agagtgctgcgtgccaagaaaggaatggttgctgaggaatacaatgcctatttctactca
ttagtgtctcaggacacacaggaaatggcgtattctacgaagagacagcggttcctggtg
gaccagggttacagttttaaggtgatcactaagttggcaggaatggaggaagaggacttg
atgttctctacacgagaggaacagcagcagcttctacagaaagtcctggcagcgaccgac
ctggacgcagaggaagaggtggtaaccggagagttcggagggaaatctcagttttctcgt
cgaaccggcaccatgagctccatgtcaggagcagacgacgccatctacatggagtatcac
acgtcacgtggcagcaagggggcagtcggcaagaacatccaccctctctttaaacgcttc
agaaagtga
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integrated database retrieval system
