Clarias gariepinus (North African catfish): 128527231
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Entry
128527231 CDS
T10780
Symbol
ddx27
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128527231 (ddx27)
03009 Ribosome biogenesis [BR:
cgar03009
]
128527231 (ddx27)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128527231 (ddx27)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128527231 (ddx27)
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
Pre-60S particles
Helicases
128527231 (ddx27)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
PRK
Motif
Other DBs
NCBI-GeneID:
128527231
NCBI-ProteinID:
XP_053355588
LinkDB
All DBs
Position
6:22851546..22870409
Genome browser
AA seq
785 aa
AA seq
DB search
MLSDFDLIGTIGDGTDVPADEESGSDDEEQPIVLVKEKKALKGKSNGDFNANFEFGERDG
LYSEDWAMADVMSQLKKRKAPTTLDEKIEKVRKKRKMEEKAQKGDNKIDTLVPKEEEEGE
DDAEDEDDDDDDNDNEDDDDNKSIDSEDQTLKDDNGGNDDDDEEDEFNSGDEEVLKKADT
LREKGKKGKRKGAEEPEAFFEDASQYDENLTFQDMNLSRPLLKAITTMGFKQPTPIQKAC
VPVGLLGKDICACAATGTGKTAAFMLPVLERLLYKPRVTQVTRVLVLVPTRELGIQVHTV
ARQLAQFTSITTCLAVGGLDLKSQEAALRLGPDVLIATPGRLIDHLHNTPSFELSQIEVL
ILDEADRMLDEYFEEQMKEIIRMCSYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSN
TDVAPYLRQEFVRIRPAREGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGL
KVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTLKHYV
HRVGRTARAGKVGRSVSLVGETERKMLKEIVKKAQAPVKARVIPQEVILKFRDLIEKLEK
DVYAVLRLEKEEKAMVHSEAQINAAQKKLTQKPEENQPARSWFQTHDERKKERMNKALQD
FDLALRGKKKRAQFLKDGKKKVLSPEERAQFEILKSQMYAERSAKRDRKPKRARVVPEDE
PKNIASKQKGGKPTKKSVFDKELTNVSKKVLKQYRSGPSFEDRKRLGLSHKKGGRFNSKA
KFRRK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgttatcggattttgatctgatcggaaccattggtgacggcactgatgtaccagcagac
gaggagtcgggctctgatgatgaggagcagcctatcgtgttggttaaggagaagaaagca
ctgaaaggaaaaagcaatggtgacttcaacgccaactttgagtttggagagcgagatgga
ctgtatagcgaggactgggccatggcagatgttatgagccaacttaaaaagagaaaagca
cctaccacgttggatgagaagattgagaaagtgcgtaagaagcgcaaaatggaggagaaa
gctcagaaaggggataacaaaatcgatacattagttcccaaagaagaggaggaaggtgaa
gatgacgctgaagacgaagatgatgatgatgatgacaatgacaatgaggatgatgatgac
aacaaaagtatagacagtgaggatcagacccttaaagatgacaatggtgggaatgatgac
gatgatgaagaagatgagtttaattcaggggatgaagaagtccttaaaaaagcagatact
ttaagggaaaaaggcaagaaaggaaaaagaaagggagcagaagagcctgaagccttcttt
gaagacgcctctcagtacgacgaaaaccttacattccaggatatgaatctgtcgagacct
ctgctgaaggccatcaccaccatgggctttaagcagcccacacctatccagaaggcatgt
gttccagtgggtttactggggaaggatatttgcgcttgtgctgctactggaacaggaaaa
actgcagcattcatgttgcctgtactggagcgtctcctttataagccgagagtaacgcag
gtaacgcgtgtgcttgtgctcgtgcccaccagagagctgggcatccaggtgcacactgtg
gcacgtcagctggcgcagttcaccagcatcaccacctgtctggctgttggtggcttggat
ctgaagtctcaagaggcagcgctgaggttggggcctgacgtgctgattgccacaccagga
cgcttgatagatcacttacacaacaccccatcttttgaactcagtcaaatcgaggtgctt
attctggacgaggctgacaggatgctagatgaatatttcgaggagcagatgaaggagatt
atccgcatgtgctcctatcaaagacagactatgctgttctctgccaccatgagtgaagag
gtaaaggacctggcctcagtgtcactaaagcagccagtgcgaatctttgtgaacagtaac
accgatgtggctccatacctcagacaagaatttgtaagaattcgaccagcccgagaagga
gacagagaggctatagtagcagcgctcctcacgcgaacgtttcaggaccatgtgatgttg
ttcacccagaccaagaagcaggcccaccgcatgcacatccttctcgggctcatggggtta
aaggttggagagctccatggcaacctgtctcagacacaaagattggaaagtctgagacga
tttaaagatgagcagattgatatcctggtggccacagatgtagcagccagaggtctggat
attgagggagtcaaaacagttataaacttcaccatgccgaacacactgaagcattacgtg
cacagagtgggtcgcacagcacgagctggaaaagtgggtcgttctgtgtcactggtgggg
gaaaccgaaagaaagatgctgaaagagattgtgaaaaaagcccaagctcctgtaaaagct
cgtgttattcctcaagaggtgatcctaaagtttagagatctgattgagaagttggagaag
gatgtatatgctgtcttgcgtttggagaaagaagagaaagcgatggtgcactcagaagca
cagattaatgcagctcagaagaaactaacacagaaacctgaagagaatcagccagcaagg
tcatggttccaaacccatgacgaaaggaagaaggagcgaatgaacaaagcacttcaggac
tttgacttggctctgagggggaagaagaagcgtgctcaattcttaaaagatggcaagaag
aaagtgctgtcgcctgaagaaagagctcagtttgaaatccttaagtctcagatgtatgca
gaacggtctgcaaaacgtgaccgaaagccaaagcgtgccagagttgtgccagaagatgaa
cccaaaaacatagcctcaaagcaaaaaggtggaaaacctacaaagaagtctgtatttgac
aaggagctcaccaatgtcagcaaaaaagtcctgaagcaatacagatctgggccttcattt
gaggatagaaaaagattaggcctttcccataaaaaaggtggacgctttaactccaaagcc
aagttcaggaggaagtga
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